10 Best Hotels in Mission Bay, San Francisco for 2026

Aerial Mission Bay with Mission Rock and view of tankers in San Francisco Bay

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Union Square

Major tourist destination in downtown San Francisco, Union Square boasts shopping, hotels, and theaters. Explore department stores, boutiques, and galleries, or catch a performance at various theaters. Enjoy the Dewey Monument and stunning views from nearby hotels. Easily accessible via cable car lines, buses, and subway systems.

See properties

Fisherman's Wharf

Discover Pier 39, Ghirardelli Square, and the San Francisco Maritime National Historical Park in this bustling tourist hotspot. Savor seafood at family-owned restaurants and explore the sea lion colony, while enjoying convenient cable car access.

See properties

Downtown San Francisco

Serving as San Francisco's central business district, this area boasts Northern California's two tallest buildings, the Salesforce Tower and Transamerica Pyramid. Explore shopping malls like the Embarcadero Center and enjoy parks such as Sue Biermann Park, all easily accessible via Muni bus and rail lines.

See properties

South of Market

From baseball games to top-notch art exhibits, find endless entertainment in one of San Francisco’s fastest-growing neighborhoods.

See properties

Nob Hill

Luxury hotels, historic mansions, and Michelin-starred restaurants abound in this upscale area. Explore Union Square shopping district, Grace Cathedral, and the SF Masonic Auditorium for a taste of culture and history.

See properties

Top Mission Bay Hotel Reviews

Holiday Inn Golden Gateway by IHG

10/10 Excellent

"Clean and friendly staff,definitely will stay again "

DoubleTree by Hilton Hotel Berkeley Marina

6/10 Okay

"This hotel is located in a wonderful bay setting but the property is old and tired. Since it is secluded from the city the dining was quite limited and the prices were outrageous. I felt I was being held hostage for a $45 breakfast which consisted of two coffees, one English muffin and an order of sausage. We walked 15 minutes to Skates and we had a lovely lunch that was value for money. One of my San Francisco friends suggested that I should have carried my own coffee and ordered hot water but that defeats the concept of hospitality. "

Chancellor Hotel on Union Square

10/10 Excellent

"The staff was friendly when I arrived and left, though I didn't have a use for their services. The room was quite, and clean which is all I really needed. Keep in mind that the room is small, if room size is important to you, this may not be for you, I took the room with the two double beds. The bathroom had a small step to it. Overall it was great and the negatives are nitpicky."

Embassy Hotel

2/10 Terrible

"This is one of the worst hotels I've ever stayed in, hands down. Don't believe the gleaming reviews as they are likely left by people working for the hotel. Lets start with the fact that the hotel is in the hood and its not safe. Drunk and high people amble around the hallways and the elevator is not key-accessed, so they can come right up to your floor. The building is also not locked during the day so anyone can waltz right in. My first impression upon arrival and check-in was being accosted by a drunken homeless man who could barely stand, asking for cigarettes and/or money. When you get in your room, you'll likely be missing necessary items and things will be broken. In my case, I had no shower curtain and my TV remote didnt work. The hotel did NOTHING to fix this despite several requests, so I had to shower without a curtain and spill water everywhere. My TV was also stuck on the QVC channel for the entire trip, so it was useless. In terms of amenities, this hotel is ancient. There is no air conditioning. Theres an old-school iron space heater you have no control over. Be ready to open your window (and jump out) to cool down and hear the sounds of the homeless screaming and ambulences roaring down the street all night long. The linens are rough, stained, and old. The bed is hard as a rock. Everything creaks under your feet. The walls are paper-thin so expect to hear every conversation, scream, vomit sound, and sex sound. TLDR; This place should be condemned."

Hilton San Francisco Financial District

6/10 Okay

"I usually have great stays at this hotel, but this particular stay was out of uncharacteristically mediocre. The staff is wonderful and everyone is working very hard. No problems there. When I got to my room (room 801), it felt like the room was hastily assembled. The blinds wouldn’t come down at all so privacy was limited, and the TV is set on a strange part of the wall away several feet from the bed, making it difficult to watch comfortably. It felt like we were basically in a storage closet-turned-hotel room. I’m sure this is just a one-off experience, but I suggest anyone booked in room 801 ask for different accommodations. "

Find out more about Mission Bay

Top reasons to visit Mission Bay

Scenic Waterfront: Enjoy picturesque views and relaxing strolls along the beautiful waterfront of Mission Bay.
Family-Friendly Beaches: Visit local beaches perfect for families, offering fun in the sun for all ages.
Recreational Activities: Engage in thrilling water sports and various recreational opportunities throughout the area.
Cultural Experiences: Immerse yourself in vibrant local galleries and theatres showcasing San Francisco's artistic side.
Diverse Accommodation: Choose from a range of hotels and resorts tailored to both leisure and business travellers.

Find great hotels near Mission Bay

Explore a variety of accommodation options in Mission Bay, San Francisco, where you'll find a mix of hotels and resorts catering to diverse needs. Whether you're seeking a pet-friendly getaway or a business-themed stay, Mission Bay has you covered. Enjoy convenient access to shopping and local attractions, making it an ideal choice for both leisure and business travellers. Discover the charm of Mission Bay with comfortable lodging that suits your vacation style.

Club Quarters Hotel in San Francisco: A delightful blend of comfort and convenience, Club Quarters Hotel is a 4-star property that caters to both pet owners and LGBTQIA travellers. Located 3.2km from Mission Bay, it boasts a shopping district ambiance with amenities designed for a welcoming experience. Guests can enjoy pet-friendly policies, complete with food and water bowls, and service animals are accommodated free of charge. The hotel’s modern design and commitment to inclusivity make it a perfect choice for those looking to explore the vibrant local shopping scene while enjoying a cozy stay.
The Westin St. Francis San Francisco on Union Square: A luxurious 4.5-star experience awaits at The Westin St. Francis, situated just 1.6km from Mission Bay. This city-themed hotel is ideal for families, offering a myriad of amenities tailored for children, including free cribs and babysitting services. The elegant decor and prime location in the city centre provide guests with immediate access to shopping and entertainment. With a focus on creating memorable experiences for families, this hotel seamlessly combines luxury with practicality, making it a top choice for visitors seeking both comfort and style.
Chancellor Hotel on Union Square: Experience the charm of the Chancellor Hotel, a 3.5-star lodging located 3.2km from Mission Bay. Nestled in the heart of the shopping district, this hotel offers a city-themed atmosphere that appeals to urban explorers. The Chancellor is known for its warm hospitality and convenient access to local attractions, making it perfect for those who wish to immerse themselves in San Francisco’s vibrant culture. With its central location and comfortable accommodations, guests can easily discover the best of the city while enjoying a relaxing retreat.

Where to stay near Mission Bay

Mission Bay, San Francisco, offers a vibrant blend of urban charm and stunning ocean views, making it an ideal spot for families and sports enthusiasts alike. Explore the picturesque waterfront, relax at family-friendly beaches, and immerse yourself in the friendly atmosphere of this unique neighbourhood. With its gentle bay waters and scenic landscapes, Mission Bay provides the perfect backdrop for unforgettable adventures and leisurely strolls by the sea.

San Francisco: A vibrant metropolis, San Francisco is home to Mission Bay and is known for its iconic landmarks and diverse cultural experiences. With a steady influx of visitors throughout the year, the city peaks in summer months. Travellers flock to enjoy family-friendly activities, outdoor adventures, and the city's bustling urban environment. Don’t miss the stunning bay views, the famous sports stadiums, and the eclectic shopping areas that define San Francisco’s charm.
Union Square: Located 3.2km from Mission Bay, Union Square is a bustling neighbourhood that serves as the heart of San Francisco's shopping and cultural scene. Popular among families and business travellers alike, the area peaks in spring and summer. Explore the vibrant shopping districts, catch a show at one of the historic theatres, or unwind in the lively tourist precinct. With its proximity to major events and conference venues, Union Square is an essential stop for any visitor.
Downtown San Francisco: Just 1.6km from Mission Bay, Downtown San Francisco is a dynamic hub of activity and culture. This area attracts visitors year-round, particularly during the summer months. Here, you’ll find an array of shopping centres, theatres, and dining options that cater to every taste. The downtown area is also home to prominent landmarks like stadiums and sports facilities, making it an exciting destination for both tourists and locals alike.

Things to do near Mission Bay

Mission Bay offers a perfect blend of activities for sports enthusiasts, families, and business travellers alike. Visitors can enjoy the nearby shopping mall and vibrant shopping areas, as well as catch a show at the local theatre. Key attractions include Mission Beach, various recreational opportunities, and thrilling water slides, ensuring a fun-filled experience for everyone.

Shopping

During your stay in Mission Bay, visit Ghirardelli Square, a vibrant shopping centre 4.8km away, offering entertainment and unique shops. Also, check out Winery Collective and Boudin Bakery, both located 4.8km away, perfect for gifts and souvenirs with a local flair.

Recreation

Experience the energy of Oracle Park with a thrilling sports event just 805m away. Enjoy vibrant entertainment at the Bill Graham Civic Auditorium, located 3.2km from Mission Bay. For a serene outdoor outing, the Presidio Golf Course, 6.4km away, offers scenic views and a relaxing atmosphere.

Adventure

Skate at the Union Square Ice Rink, which offers a fun winter experience only 1.6km from Mission Bay. For a scenic hike, explore the Ecology Trail, located 3.2km away, where you can enjoy beautiful landscapes and nature vibes. Perimeter Road, 9.7km from Mission Bay, is perfect for outdoor adventures.

Nightlife

Experience the vibrant nightlife in Mission Bay by catching a show at the Orpheum Theatre, just 1.6km away, or enjoy a performance at the Louise Davies Symphony Hall and War Memorial Opera House, both two miles away. Each venue offers a blend of culture and entertainment.

*Distances are measured in a straight line; actual driving distances may vary depending on the route.

Booking tips and Expedia advantages for Mission Bay

To save money on your visit to Mission Bay, plan your trip in February or November to December when accommodation prices are lower, avoiding the peak months of August to October. Look for deals on Fridays, as they tend to be the least expensive days to stay. Use Expedia to compare prices and refine your accommodation choices by budget and type, including eco-friendly options. Consider booking a package that combines your hotel, flights, and activities for additional savings. Additionally, make the most of free activities in the area to keep your costs down.

The most and least expensive months on average to stay in a hotel: The cheapest months to stay around Mission Bay are February and November to December, where the prices are slightly lower. This is in comparison to August to October, where prices are slightly higher.
The most and least expensive days on average to stay in a hotel: The least expensive day to stay around Mission Bay is Friday. The most expensive day to stay around Mission Bay is Tuesday.
Find cheap hotels on Expedia: Utilize Expedia’s search tool to refine your choices based on your budget, desired location, and preferred type of accommodation. For instance, selecting the Eco-certified filter will showcase sustainable and environmentally friendly hotels that are currently available. To find the best prices and offers, simply sort the price filter from lowest to highest.
Consider bundling your trip: You can save on your trip by combining your hotel stay in Mission Bay with your flights and activities through an Expedia package.

Find the best attractions near Mission Bay

Mission Bay in San Francisco is an ideal destination for sports enthusiasts, families, and business travellers alike. With attractions such as Mission Bay Park, San Diego beachfront, and Ocean Beach, visitors can immerse themselves in urban parks, vibrant streets, and local galleries. Whether you're seeking cultural experiences or family-friendly activities, there’s plenty to discover in and around Mission Bay, including the scenic Mission Bay Shores and various opportunities to explore the area.

Moscone Convention Center: Known for its sleek architecture and vibrant atmosphere, the Moscone Convention Center hosts a variety of events, from tech conferences to art exhibitions. Its business vibes create a dynamic environment where innovation and networking thrive, making it an exciting stop for any visitor.
Union Square: This bustling modern square is the heart of San Francisco's shopping and dining scene. With its lively street performers and chic boutiques, Union Square offers a vibrant city vibe that captures the essence of urban life.
San Francisco Museum of Modern Art: As a premier art museum, SFMOMA showcases an impressive collection of contemporary art. The cultural vibes here invite exploration and reflection, making it a must-visit for art enthusiasts and casual visitors alike.

Best time to go to Mission Bay

The best time to visit Mission Bay can depend on the weather and when visitor numbers rise and fall. The hottest average temperature around Mission Bay falls in September, when visitor numbers are average and weather is sunny with no rain. The coolest average temperature around Mission Bay falls in December, visitor numbers are slightly low and weather is mostly sunny with light rain.

Calendar Month	Temperature	Precipitation	Cloudiness	Occupancy	Pricing
January	51.4°F (10.8°C)	Light Rain	Mostly Sunny	Average	Average
February	52.2°F (11.2°C)	Light Rain	Mostly Sunny	Average	Slightly Low
March	53.4°F (11.9°C)	Light Rain	Mostly Sunny	Average	Average
April	55.8°F (13.2°C)	No Rain	Mostly Sunny	Slightly High	Average
May	58.1°F (14.5°C)	No Rain	Sunny	Slightly High	Average
June	62.1°F (16.7°C)	No Rain	Sunny	Slightly High	Average
July	63.1°F (17.3°C)	No Rain	Sunny	Average	Average
August	64.2°F (17.9°C)	No Rain	Sunny	Average	Slightly High
September	64.9°F (18.3°C)	No Rain	Sunny	Average	Slightly High
October	62.6°F (17.0°C)	No Rain	Sunny	Slightly Low	Slightly High
November	56.1°F (13.4°C)	No Rain	Mostly Sunny	Slightly Low	Slightly Low
December	51.3°F (10.7°C)	Light Rain	Mostly Sunny	Slightly Low	Slightly Low

The nearest major airports for your trip to Mission Bay

When visiting Mission Bay in San Francisco, you have several airport options. San Francisco International Airport (SFO) is located 17.7km away, with nearby hotels like the Fairmont San Francisco and the Palace Hotel, both offering transportation services. Oakland International Airport (OAK) is also 17.7km from Mission Bay, with excellent hotel choices including 1 Hotel San Francisco and Claremont Resort & Club. For those considering San Jose International Airport (SJC), it is 61.2km away, with notable accommodations such as Shashi Hotel Mountain View Palo Alto and the Ameswell Hotel, providing easy access to the airport. Each of these options ensures a comfortable stay while exploring the area.

Frequently asked questions

What are the best hotels in Mission Bay that travellers recommend?

LUMA Hotel San Francisco is an exceptional choice for travellers seeking a blend of luxury and comfort, boasting a great rating of 9.6. This hotel offers a great experience with amenities such as valet parking, designer toiletries, and premium bedding, ensuring a restful stay. Guests can unwind on their private balconies or patios, and the fitness centre is great for those looking to maintain their workout routine while traveling.

For couples, the Omni San Francisco Hotel, also rated 9.6, is an ideal romantic getaway. With its luxurious Egyptian cotton sheets and a full-service spa, it's a haven for relaxation. Couples can enjoy a quiet evening in the hotel's sophisticated ambiance while still being close to the vibrant heart of San Francisco. The presence of a rooftop terrace adds an extra romantic touch, great for stargazing after a day of adventure.

Families will appreciate the citizenM San Francisco Union Square, equally rated at 9.6. This hotel offers a 24-hour business centre and coworking spaces, making it convenient for parents who need to balance work and family time. The restaurant is open around the clock, ensuring that late-night snacks or early breakfasts are never a hassle. Plus, children stay free, making it budget-friendly for families eager to explore the city together.

For business travellers, the Orchard Garden Hotel stands out with its meeting rooms and conference spaces, alongside a 9.6 traveller rating. Nestled in a prime location, it features a business centre that is accessible around the clock, ensuring that work commitments can be comfortably managed. The proximity to the shopping district also offers a delightful break after a long day of meetings.

These hotels in Mission Bay cater to a variety of travellers, ensuring that whether you're seeking romance, family-friendly options, or a productive business stay, there's something to suit your needs while providing exceptional service and comfort.

What are the best 5-star hotels in Mission Bay?

The Four Seasons Hotel San Francisco is a great choice for luxury seekers in Mission Bay, boasting a great rating of 9.4 from guests who appreciate its elegant ambiance and top-tier amenities. This 5-star hotel is known for its full-service spa, where couples can indulge in a variety of treatments, including aromatherapy and body wraps, ensuring a serene escape from the hustle and bustle of city life.

For those looking to enjoy a bit of extravagance, the Four Seasons features spacious rooms adorned with premium bedding and designer toiletries, providing an inclusive setting for a romantic getaway. Couples dining options elevate the experience further, complemented by 24-hour room service and the option for in-room massages to enhance your stay.

Another exceptional option is The Ritz-Carlton, San Francisco, also rated 9.4 by travellers. With its luxurious designer stores on-site and the indulgent Frette Italian sheets, this hotel offers an exclusive feel. Guests can unwind in the club-level lounge with refreshments or explore the nearby shopping district, making it an ideal choice for couples who appreciate both luxury and convenience.

For those who prefer a more intimate setting, the Taj Campton Place, rated 9.2, provides a romantic atmosphere with its couples dining and champagne service. This hotel not only offers comfort with its premium bedding and bathrobes but also offers a delightful experience for pets, ensuring your furry family members can join the adventure.

In Mission Bay, these exquisite 5-star hotels promise a luxurious and memorable stay, allowing you to focus on creating special moments with your loved one while enjoying the finest amenities the area has to offer.

What are the best spa hotels in Mission Bay?

For a rejuvenating retreat, the Omni San Francisco Hotel is an excellent choice, boasting a great rating of 9.6. This hotel offers in-room massage services, allowing guests to unwind in the comfort of their own space. The inclusive setting and attentive service make it a favorite for those looking to indulge in a relaxing getaway.

Another impressive option is the Hotel Nikko San Francisco, rated 9.4. With its steam room and accessible spa facilities, this hotel provides a holistic wellness experience that caters to both relaxation and convenience. Guests also appreciate the sauna, enhancing their spa experience and providing a serene escape from the bustling city.

For the ultimate in luxury, the Four Seasons Hotel San Francisco stands out, also rated 9.4. This hotel features a full-service spa with a wide array of treatments, including body wraps, facials, and even Ayurvedic treatments. The onsite amenities, such as manicures and pedicures, ensure that every aspect of pampering is covered, making it a top destination for travellers seeking an extensive spa experience.

Each of these hotels offers a unique blend of charm and practicality, ensuring that visitors have access to high-quality wellness services while enjoying a relaxing atmosphere. Whether you're planning a romantic getaway or simply wish to indulge in some personal TLC, these spa hotels provide the great sanctuary for relaxation and rejuvenation in Mission Bay.

What are the top boutique hotels in Mission Bay?

The Inn At Union Square is a charming boutique hotel located in the heart of San Francisco, rated an impressive 9.4 by guests. This Edwardian property design exudes elegance and sophistication, making it an ideal choice for couples seeking a romantic getaway. Each room is thoughtfully adorned with premium bedding and designer toiletries, ensuring a comfortable and luxurious stay. The cozy fireplace adds a touch of intimacy, great for those quiet evenings together.

For couples who appreciate the finer things in life, the Taj Campton Place offers an exquisite experience with its couples dining options and champagne service. Also rated 9.2, this hotel places you right in a bustling shopping district, making it easy to indulge in a bit of retail therapy together. The 24-hour room service ensures that you can enjoy a romantic meal in the privacy of your room, while valet parking adds a layer of convenience that enhances your stay.

Another delightful option is The Clift Royal Sonesta San Francisco, boasting a review score of 9.2. The luxurious Egyptian cotton sheets and plush bathrobes set the stage for relaxation, while its stylish ambiance is great for couples looking to unwind after a day of exploring the vibrant city.

The Hotel Emblem also shines with a guest rating of 9.4, offering secured valet parking and designer toiletries for an added touch of luxury. Each stay is complemented by thoughtful details that make every moment special.

Whether you're seeking a romantic escape or simply looking to indulge in the elegance of San Francisco, these boutique hotels provide the great backdrop for creating unforgettable memories with your loved one.

What are the most romantic hotels in Mission Bay for couples?

For couples seeking a romantic escape in Mission Bay, the Four Seasons Hotel San Francisco is a top choice, boasting an impressive rating of 9.4. This luxurious hotel offers a full-service spa that includes a variety of treatments, from Ayurvedic therapies to in-room massages, ensuring that you and your partner can unwind in style. The on-site dining options are superb for couples, featuring romantic meals that can be enjoyed in an intimate setting.

Another excellent option is the Taj Campton Place, rated 9.2, which also offers couples dining and features a delightful champagne service. The hotel's charming ambiance is complemented by luxurious amenities such as bathrobes and premium bedding, creating a cozy atmosphere for lovebirds.

If you're looking for a blend of romance and convenience, the San Francisco Proper Hotel, rated 8.8, offers charming terrace options for alfresco dining, along with thoughtful services like 24-hour room service and valet parking. This hotel is superb for couples who appreciate style and comfort, making it an ideal base for exploring the vibrant Mission Bay area together.

Whether you're indulging in a spa day or enjoying a romantic dinner, these hotels provide the superb setting for couples to create lasting memories in the heart of San Francisco.

Can I cancel my hotel reservation on Expedia?

You can cancel your hotel reservation on Expedia, though it depends on the cancellation policy of your booking. Most bookings are refundable if canceled within 24-48 hours of the scheduled arrival. Be sure to check your booking confirmation for the exact cancellation policy. If free cancellation is available, you can cancel directly through your Expedia account by logging in, going to "My Trips", and selecting your reservation. To find flexible deals, filter your search by "Fully refundable property" for hotels in Mission Bay.

How can I save on a Mission Bay hotel booking with Expedia?

With Expedia, you'll unlock our lowest prices by becoming a member. It's free and easy to join, and you can even access member perks too. Just remember to sign in to get our best prices on Mission Bay hotels. Another way to save is by booking your hotel and flights together on Expedia, where bundling can lead to significant savings.

How much is the nightly rate at a Mission Bay hotel?

Hotel prices in Mission Bay often vary, but you can find a great deal on Expedia. Different factors affect nightly hotel rates, such as the time of year or the days of the week you want to book. To find the best deals for your stay, be flexible with your dates, and sort search results by "Price: low to high" for our cheapest rates.

Explore a world of travel with Expedia

Things to do in San Francisco

Book Hotels in Mission Bay on Expedia.com

Hotels in Mission Bay, San Francisco

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Our top choices for Mission Bay hotels

LUMA Hotel San Francisco

Best Western Inn & Suites San Mateo - San Francisco Airport

Stanyan Park Hotel

Hampton Inn & Suites San Mateo-San Francisco Airport

Aloft San Francisco Airport

Embassy Suites by Hilton San Rafael at Marin Center

The Dylan at SFO

Alpine Inn And Suites

La Quinta Inn & Suites by Wyndham San Francisco Airport West

The Marina Inn on San Francisco Bay

Marin Lodge

Lafayette Park Hotel & Spa

Best Western Plus Grosvenor Airport Hotel

The Catrina Hotel

Hotel Riu Plaza Fisherman's Wharf

La Quinta Inn & Suites by Wyndham Oakland - Hayward

Hilton San Francisco Financial District

SFO El Rancho Inn SureStay Collection by Best Western

DoubleTree by Hilton San Francisco South Airport Blvd

Holiday Inn Hotel & Suites San Mateo-San Francisco SFO by IHG

Where to stay in Mission Bay

Union Square

Fisherman's Wharf

Downtown San Francisco

South of Market

Nob Hill

Top Mission Bay Hotel Reviews

Holiday Inn Golden Gateway by IHG

Find out more about Mission Bay

Top reasons to visit Mission Bay

Find great hotels near Mission Bay

Where to stay near Mission Bay

Things to do near Mission Bay

Booking tips and Expedia advantages for Mission Bay

Find the best attractions near Mission Bay

Best time to go to Mission Bay

The nearest major airports for your trip to Mission Bay

Frequently asked questions

Explore a world of travel with Expedia