Find hotels in Southeast Minnesota, MN from CA $94
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Go beyond your typical stay in Southeast Minnesota
Pet friendly
Cabin
Villa
Apartment
Condo
Apart hotel
Farm
Cottage
Family friendly
Check prices for these dates
Tonight
Oct 17 - Oct 18Tomorrow
Oct 18 - Oct 19Next weekend
Oct 23 - Oct 25In two weeks
Oct 30 - Nov 1Our top choices for Southeast Minnesota hotels
1. Hampton Inn & Suites Rochester-North
Hampton Inn & Suites Rochester-NorthRochester
Mark
CA $145
CA $167 total
includes taxes & fees
Nov 6 - Nov 7
2. EVEN Hotel Rochester - Mayo Clinic Area by IHG
EVEN Hotel Rochester - Mayo Clinic Area by IHGKutzky Park
James
CA $161
CA $205 total
includes taxes & fees
Oct 23 - Oct 24
3. Hotel Indigo Rochester – Mayo Clinic Area by IHG
Hotel Indigo Rochester – Mayo Clinic Area by IHGDowntown Rochester
Hernan
CA $151
CA $174 total
includes taxes & fees
Oct 23 - Oct 24
4. Hyatt House Rochester/Mayo Clinic Area
Hyatt House Rochester/Mayo Clinic AreaDowntown Rochester
Elsie
CA $167
CA $192 total
includes taxes & fees
Oct 24 - Oct 25
5. Econo Lodge Mayo Clinic Area
Econo Lodge Mayo Clinic AreaRochester
Ashley
CA $95
CA $109 total
includes taxes & fees
Nov 8 - Nov 9
6. AmericInn by Wyndham Rochester Near Mayo Clinic
AmericInn by Wyndham Rochester Near Mayo ClinicRochester
blake
CA $103
CA $119 total
includes taxes & fees
Oct 25 - Oct 26
7. Comfort Inn & Suites Rochester South Mayo Clinic
Comfort Inn & Suites Rochester South Mayo ClinicRochester
Darlene
CA $109
CA $126 total
includes taxes & fees
Nov 15 - Nov 16
8. Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHG
Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHGKutzky Park
Janet
CA $143
CA $164 total
includes taxes & fees
Oct 23 - Oct 24
9. Sleep Inn & Suites West-Near Medical Center
Sleep Inn & Suites West-Near Medical CenterRochester
Jacqueline
CA $109
CA $126 total
includes taxes & fees
Nov 8 - Nov 9
10. Spark by Hilton Rochester South
Spark by Hilton Rochester SouthRochester
Stanton
CA $115
CA $133 total
includes taxes & fees
Nov 1 - Nov 2
11. Comfort Inn & Suites West - Medical Center
Comfort Inn & Suites West - Medical CenterRochester
Lori
CA $124
CA $142 total
includes taxes & fees
Nov 8 - Nov 9
12. Hampton Inn Rochester-South
Hampton Inn Rochester-SouthRochester
dennis
CA $149
CA $172 total
includes taxes & fees
Oct 24 - Oct 25
13. Treasure Island Resort & Casino
Treasure Island Resort & CasinoWelch
Bill
CA $118
CA $147 total
includes taxes & fees
Nov 1 - Nov 2
14. Staybridge Suites Rochester - Mayo Clinic Area by IHG
Staybridge Suites Rochester - Mayo Clinic Area by IHGKutzky Park
Amanda
CA $161
CA $188 total
includes taxes & fees
Nov 1 - Nov 2
16. Quality Inn & Suites Mayo Clinic Area
Quality Inn & Suites Mayo Clinic AreaRochester
Jessica
CA $96
CA $112 total
includes taxes & fees
Nov 13 - Nov 14
17. TownePlace Suites by Marriott Rochester
TownePlace Suites by Marriott RochesterRochester
Kari
CA $139
CA $160 total
includes taxes & fees
Oct 24 - Oct 25
18. Americas Best Value Inn Zumbrota
Americas Best Value Inn ZumbrotaZumbrota
Jeff
CA $84
CA $90 total
includes taxes & fees
Oct 18 - Oct 19
19. Microtel Inn & Suites by Wyndham Rochester North Mayo Clinic
Microtel Inn & Suites by Wyndham Rochester North Mayo ClinicRochester
John
CA $99
CA $113 total
includes taxes & fees
Nov 1 - Nov 2
20. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys
Fairfield Inn & Suites Rochester Mayo Clinic Area/St. MarysKutzky Park
Jon
CA $171
CA $196 total
includes taxes & fees
Nov 6 - Nov 7
Stay near popular Southeast Minnesota attractions
Villa Bellezza
8.4/10 (31 reviews)
You can enjoy a tasting or tour at Villa Bellezza during your travels to Pepin. While you're in the area, stroll along the lakeside.
Photo by T. Jen
Forestville Mystery Cave State Park
9.0/10 (22 reviews)
Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.
Mayo Civic Center
9.2/10 (818 reviews)
Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.
Apache Mall
8.6/10 (1,101 reviews)
During your visit to Rochester, you can do some window-shopping at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Rochester Recreation Center
8.0/10 (205 reviews)
Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
National Volleyball Center
7.8/10 (151 reviews)
Catch an event at National Volleyball Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Welch Village Ski Area
8.6/10 (16 reviews)
Hit the slopes in Welch with a visit to Welch Village Ski Area. Stroll along the area's riverfront or simply enjoy its coffeehouses.
Regional Sports Center
8.0/10 (63 reviews)
Catch an event at Regional Sports Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Learn more about Southeast Minnesota
Explore the family-friendly area of Southeast Minnesota—restaurants, sports teams, and sights from Mayowood Mansion to Apache Mall.
See all hotels in Southeast Minnesota
Top Southeast Minnesota Hotel Reviews
Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area
10/10 Excellent
"the shuttle service is incredible, helps to make my stay stress free from driving and gets me to my appointments ahead of time too. Food is always great and a good selection of it. nice to eat then walk up to my room and relax. stayed many times and always had a great experience."
St James Hotel, a Historic Hotel of America
10/10 Excellent
"An absolutely gorgeous hotel. The room was huge, beds comfortable. A very special place with lots to explore inside and around town."
Express Suites Riverport Inn & Suites
8/10 Good
"Close to the hospital. Good food at the bistro. Breakfast was good. View of Target was dismal but definitely a walkable location"
Kahler Inn and Suites - Mayo Clinic Area
8/10 Good
"Overall, it was a good experience, very convenient to Mayo Clinic and Methodist Hospital. The woman who checked us in this time was not very welcoming, don’t think she wanted to be there."
EVEN Hotel Rochester - Mayo Clinic Area by IHG
10/10 Excellent
"The room was incredibly spacious and they had a yoga mat, yoga block, and resistance bands in the room which I think was thoughtful. The hotel's restaurant food and drinks were really good too. I really enjoyed my stayed. I would stay there away if ever in town."
Kahler Grand Hotel
10/10 Excellent
"We love this hotel and will definitely stay again. It was convenient to Mayo's, there were restaurants close by so everything was very convenient."
Hyatt House Rochester/Mayo Clinic Area
10/10 Excellent
"Helpful staff, easy check-in, clean room and property. We didn’t know about the free breakfast and that was a great surprise! Nice to have parking attached to the hotel. Our room was very spacious and we loved having the kitchen and counter top space. We will stay at the Hyatt again."
Brentwood Inn & Suites
10/10 Excellent
"Everyone was very helpful even the guests. Breakfast was good. Parking was great."
Super 8 by Wyndham Winona MN
8/10 Good
"Breakfast area is too small. On a busy morning you won’t have a place to sit."
More cheap stays in Southeast Minnesota
Birch Hill Suite Rochester – Med City
3595 Commercial Drive SW Rochester MN
CA $82
CA $94 total
Oct 18 - Oct 19
includes taxes & fees
Boarders Inn & Suites by Cobblestone Hotels - Faribault
1801 Lavender Dr Faribault MN
CA $102
CA $112 total
Oct 25 - Oct 26
includes taxes & fees
7.8/10 Good! (1,000 reviews)
Med City Inn & Suites - Mayo Clinic Area
435 16th Ave Nw Rochester MN
CA $107
CA $123 total
Oct 18 - Oct 19
includes taxes & fees
Country Inn & Suites by Radisson, Albert Lea - Austin
2214 E Main St Albert Lea MN
CA $115
CA $127 total
Nov 1 - Nov 2
includes taxes & fees
8.6/10 Excellent! (1,003 reviews)
Cobblestone Hotel & Suites - Austin
1000 16th Avenue NW Austin MN
CA $151
CA $168 total
Oct 25 - Oct 26
includes taxes & fees
Brentwood Inn & Suites
123 Fourth Ave. NW Rochester MN
CA $177
CA $204 total
Nov 6 - Nov 7
includes taxes & fees
8.8/10 Excellent! (1,005 reviews)
Hotels in Southeast Minnesota with star rating
4 Star Hotels
8 properties
3 Star Hotels
111 properties
2 Star Hotels
87 properties
Explore a world of travel with Expedia
- Motels in Rochester
- Luxury King Suite—Steps from Mayo Clinic Hospital
- Med City Inn & Suites
- Spa Hotels in Rochester
- Hyatt House Rochester/Mayo Clinic Area
- Northfield Hotels
- Hotels with Balconies in Rochester
- Morristown Hotels
- Reads Landing Hotels
- Austin Hotels
- Geneva Hotels
- Luxury Hotels in Rochester
- Bloomington Hotels
- Hotels with Waterslides in Rochester
- Wabasha Hotels
- Faribault Hotels
- Cheap Hotels in Rochester
- Vacation Homes in Wanamingo
- Hotels near Mall of America
- Mayo Discount! 4 bed
- Cannon Falls Hotels
- Hotels near Shattuck-St. Mary's School
- Dodge Center Hotels
- Hotels near St. Olaf College
- Hostels in Rochester
- Kasson Hotels
- Hotels near Spam Museum
- Staybridge Suites Rochester
- B&B in Kasson
- Owatonna Hotels
- Red Wing Hotels
- Spark by Hilton Rochester South
- Waterpark Hotels in Rochester
- Quality Inn near Medical Center
- Upscale King Suite—Steps from Mayo Clinic Hospital
- Lake City Hotels
- Comfort Inn & Suites Rochester South Mayo Clinic
- Rochester Hotels
- Blooming Prairie Hotels
- Lgbt Friendly Hotels in Northrup
- Even Hotel Rochester
- Family Hotels in Rochester
- Hotels near Mayo Clinic
- St. Charles Hotels
- Cabin Rentals in Rochester
- Hotels near Mayo Clinic Hospital - Saint Marys Campus
- B&B in Hayfield
- Stewartville Hotels
- Albert Lea Hotels
- Farmington Hotels
- All Inclusive Resorts and in Rochester
- Dundas Hotels
- Hotels with Kitchenettes in Rochester
- Condo Rentals in Concord
- The Berkman
- Hotel Indigo Rochester – Mayo Clinic Area by IHG
- Hotels with Free Airport Shuttle in Rochester
- Pet-Friendly Hotels in Rochester
- Welch Hotels
- Pine Island Hotels
- Hotels near Minneapolis - St. Paul Intl.
- Flights from Waterloo (ALO) to Rochester (RST)
- Flights from Vancouver (YVR) to Rochester (RST)
- Flights to Rochester
- Flights from Edmonton (YEG) to Rochester (RST)
- Flights from Winnipeg (YWG) to Rochester (RST)
- Flights from Saskatoon (YXE) to Rochester (RST)
- Flights from Detroit (DTW) to Rochester (RST)
- Flights from Minneapolis (MSP) to Rochester (RST)
- Flights from Edmonton (YEG) to Minneapolis (MSP)
- Flights from Timmins (YTS) to Rochester (RST)
- Flights from Chicago (ORD) to Rochester (RST)
- Flights from Seattle (SEA) to Rochester (RST)
- Flights from Victoria (YYJ) to Rochester (RST)
- Flights from Thunder Bay (YQT) to Rochester (RST)
- Flights from Minot (MOT) to Rochester (RST)
- Flights from Sudbury (YSB) to Rochester (RST)
- Flights from Kitchener (YKF) to Rochester (RST)
- Flights from Hamilton (YHM) to Rochester (RST)
- Flights from Toronto (YYZ) to Minneapolis (MSP)
- Flights to Rochester Intl.
- Flights from Vero Beach (VRB) to Rochester (RST)
- Flights from Winnipeg (YWG) to Minneapolis (MSP)
- Flights from Calgary (YYC) to Rochester (RST)
- Flights from New York (LGA) to Rochester (RST)
- Flights from Regina (YQR) to Rochester (RST)
- Flights from Ottawa (YOW) to Rochester (RST)
- Flights from Calgary (YYC) to Minneapolis (MSP)
- Flights from Montreal (YUL) to Rochester (RST)
- Flights from Montreal (YUL) to Minneapolis (MSP)
- Flights from International Falls (INL) to Rochester (RST)
- Flights from Grand Forks (GFK) to Rochester (RST)
- Flights from Buffalo (BUF) to Rochester (RST)
- Flights from Kelowna (YLW) to Rochester (RST)
- Flights from Toronto (YYZ) to Rochester (RST)
- Flights from Vancouver (YVR) to Minneapolis (MSP)
