Find hotels in Southeast Minnesota, MN from CA $90
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Sep 3 - Sep 4Tomorrow
Sep 4 - Sep 5This weekend
Sep 4 - Sep 6Next weekend
Sep 11 - Sep 13Our top choices for Southeast Minnesota hotels
1. Hampton Inn & Suites Rochester-North
Hampton Inn & Suites Rochester-NorthRochester
Dr. Tim
CA $142
CA $163 total
includes taxes & fees
Sep 27 - Sep 28
2. Comfort Inn & Suites Rochester South Mayo Clinic
Comfort Inn & Suites Rochester South Mayo ClinicRochester
Richard
CA $105
CA $121 total
includes taxes & fees
Oct 4 - Oct 5
3. Hyatt House Rochester/Mayo Clinic Area
Hyatt House Rochester/Mayo Clinic AreaDowntown Rochester
Mary Jo
CA $163
CA $188 total
includes taxes & fees
Oct 3 - Oct 4
4. Hotel Indigo Rochester – Mayo Clinic Area by IHG
Hotel Indigo Rochester – Mayo Clinic Area by IHGDowntown Rochester
Kyle
CA $143
CA $164 total
includes taxes & fees
Sep 11 - Sep 12
5. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys
Fairfield Inn & Suites Rochester Mayo Clinic Area/St. MarysKutzky Park
Jon
CA $151
CA $174 total
includes taxes & fees
Sep 4 - Sep 5
6. Staybridge Suites Rochester - Commerce Dr NW by IHG
Staybridge Suites Rochester - Commerce Dr NW by IHGRochester
Tamra
CA $175
CA $202 total
includes taxes & fees
Sep 4 - Sep 5
7. Residence Inn by Marriott Rochester Mayo Clinic Area South
Residence Inn by Marriott Rochester Mayo Clinic Area SouthRochester
Heather
CA $183
CA $211 total
includes taxes & fees
Oct 2 - Oct 3
8. EVEN Hotel Rochester - Mayo Clinic Area by IHG
EVEN Hotel Rochester - Mayo Clinic Area by IHGKutzky Park
paul
CA $141
CA $181 total
includes taxes & fees
Oct 3 - Oct 4
9. Spark by Hilton Rochester South
Spark by Hilton Rochester SouthRochester
Helena
CA $120
CA $138 total
includes taxes & fees
Sep 6 - Sep 7
10. Holiday Inn Express Rochester South - Mayo Area by IHG
Holiday Inn Express Rochester South - Mayo Area by IHGRochester
Dezel
CA $129
CA $149 total
includes taxes & fees
Oct 1 - Oct 2
11. Hampton Inn Rochester-South
Hampton Inn Rochester-SouthRochester
Lynne
CA $131
CA $150 total
includes taxes & fees
Oct 1 - Oct 2
12. Home2 Suites by Hilton Rochester Mayo Clinic Area
Home2 Suites by Hilton Rochester Mayo Clinic AreaRochester
Vickie
CA $169
CA $195 total
includes taxes & fees
Sep 11 - Sep 12
13. Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area
Centerstone Plaza Hotel Soldiers Field - Mayo Clinic AreaHistoric Southwest
Brandolyn
CA $149
CA $172 total
includes taxes & fees
Sep 4 - Sep 5
14. Hilton Garden Inn Rochester Downtown, MN
Hilton Garden Inn Rochester Downtown, MNDowntown Rochester
BRIAN
CA $158
CA $182 total
includes taxes & fees
Sep 11 - Sep 12
15. TownePlace Suites by Marriott Rochester Mayo Clinic Area
TownePlace Suites by Marriott Rochester Mayo Clinic AreaKutzky Park
Jorge
CA $190
CA $218 total
includes taxes & fees
Sep 11 - Sep 12
16. Baymont by Wyndham Kasson Rochester Area
Baymont by Wyndham Kasson Rochester AreaKasson
Bryce
CA $84
CA $90 total
includes taxes & fees
Sep 13 - Sep 14
17. Hilton Rochester Mayo Clinic Area
Hilton Rochester Mayo Clinic AreaDowntown Rochester
Jennifer
CA $249
CA $286 total
includes taxes & fees
Sep 11 - Sep 12
18. Staybridge Suites Rochester - Mayo Clinic Area by IHG
Staybridge Suites Rochester - Mayo Clinic Area by IHGKutzky Park
matthew
CA $154
CA $180 total
includes taxes & fees
Sep 12 - Sep 13
19. Brentwood Inn & Suites
Brentwood Inn & SuitesDowntown Rochester
Richard
CA $130
CA $149 total
includes taxes & fees
Sep 5 - Sep 6
20. Econo Lodge Mayo Clinic Area
Econo Lodge Mayo Clinic AreaRochester
Kathleen
CA $96
CA $111 total
includes taxes & fees
Sep 27 - Sep 28
Stay near popular Southeast Minnesota attractions
Photo by T. Jen
Forestville Mystery Cave State Park
9.0/10 (22 reviews)
Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.
Photo by Linda Strub
Niagara Cave
9.2/10 (23 reviews)
Commune with nature and explore the great outdoors at Niagara Cave during your travels in Harmony. Amble within the natural setting or visit the churches in this family-friendly area.
Villa Bellezza
8.4/10 (31 reviews)
You can enjoy a tasting or tour at Villa Bellezza during your travels to Pepin. While you're in the area, stroll along the lakeside.
Mayo Civic Center
9.2/10 (818 reviews)
Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.
Apache Mall
8.6/10 (1,101 reviews)
During your visit to Rochester, you can do some window-shopping at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Rochester Recreation Center
8.0/10 (205 reviews)
Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Olmsted County Fairgrounds
7.8/10 (177 reviews)
Take the family on an outing to Olmsted County Fairgrounds during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Shattuck-St. Mary's School
9.6/10 (69 reviews)
Enjoy the collegiate vibe when you visit Shattuck-St. Mary's School, during your trip to Faribault. Visit the shops in this family-friendly area, or simply enjoy its coffeehouses.
Learn more about Southeast Minnesota
Explore the family-friendly area of Southeast Minnesota—restaurants, sports teams, and sights from Mayowood Mansion to Apache Mall.
See all hotels in Southeast Minnesota
Top Southeast Minnesota Hotel Reviews
Hotel Indigo Rochester – Mayo Clinic Area by IHG
10/10 Excellent
"Best happy hour ever! Great prices, nice selection of food, and generous portions. Chef is very good, Darian does a fabulous job at the bar. Breakfast is also a good value and tasty food."
Kahler Grand Hotel
10/10 Excellent
"Proximity to where I needed to be, considerate staff."
St James Hotel, a Historic Hotel of America
8/10 Good
"The common areas and restaurant are really nice and updated, although our room was not, and could use a little facelift. BUT, the beds and shower were fantastic and that is the most important for us."
Med City Inn & Suites - Mayo Clinic Area
8/10 Good
"It’s a very long walk to the elevator and its hard to find. If using the shuttle, be sure to plan to be riding for an hour after too."
Super 8 by Wyndham Winona MN
10/10 Excellent
"Perfect spot for short teip"
EVEN Hotel Rochester - Mayo Clinic Area by IHG
8/10 Good
"Very pleasant hotel, it shows that the management is trying to provide a good experience. The A/C unit was defective, is still summer, I requested twice maintenance. They came, looked at it, declared it defective, and I got the I'll be back later, and nothing happened. Otherwise a very pleasant place."
Hyatt House Rochester/Mayo Clinic Area
10/10 Excellent
"Staff here were very friendly and kind; our son was seen at Mayo Clinic and we were running late to do our check out but we called and asked if we could move it up to another hour and they were kind enough to say yes and that made this trip easier and stress free. Highly recommended!!"
Aspen Select
10/10 Excellent
"Very good experience. Accommodating to our needs."
SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys
8/10 Good
"Check out was very confusing. It took about a half hour and I am still not sure if the billing was correct. Food was fine."
More cheap stays in Southeast Minnesota
Birch Hill Suite Rochester – Med City
3595 Commercial Drive SW Rochester MN
CA $80
CA $93 total
Oct 4 - Oct 5
includes taxes & fees
Med City Inn & Suites - Mayo Clinic Area
435 16th Ave Nw Rochester MN
CA $87
CA $100 total
Sep 5 - Sep 6
includes taxes & fees
8/10 Very good! (1,014 reviews)
Super 8 by Wyndham Winona MN
1025 Sugar Loaf Rd Winona MN
CA $89
CA $101 total
Sep 13 - Sep 14
includes taxes & fees
7.6/10 Good! (1,003 reviews)
Boarders Inn & Suites by Cobblestone Hotels - Faribault
1801 Lavender Dr Faribault MN
CA $102
CA $113 total
Sep 9 - Sep 10
includes taxes & fees
Cobblestone Hotel & Suites - Austin
1000 16th Avenue NW Austin MN
CA $116
CA $129 total
Oct 4 - Oct 5
includes taxes & fees
Best Western Rochester Hotel Mayo Clinic Area/St. Mary's
1517 16th St Sw Rochester MN
CA $137
CA $157 total
Sep 22 - Sep 23
includes taxes & fees
Hotels in Southeast Minnesota with star rating
4 Star Hotels
8 properties
3 Star Hotels
111 properties
2 Star Hotels
86 properties
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- Motels in Rochester
- Luxury King Suite—Steps from Mayo Clinic Hospital
- Med City Inn & Suites
- Spa Hotels in Rochester
- Hyatt House Rochester/Mayo Clinic Area
- Northfield Hotels
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- Bloomington Hotels
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- Cheap Hotels in Rochester
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- Hotels near Mall of America
- Mayo Discount! 4 bed
- Cannon Falls Hotels
- Hotels near Shattuck-St. Mary's School
- Dodge Center Hotels
- Hotels near St. Olaf College
- Hostels in Rochester
- Kasson Hotels
- Hotels near Spam Museum
- Staybridge Suites Rochester
- B&B in Kasson
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- Spark by Hilton Rochester South
- Waterpark Hotels in Rochester
- Quality Inn near Medical Center
- Upscale King Suite—Steps from Mayo Clinic Hospital
- Lake City Hotels
- Comfort Inn & Suites Rochester South Mayo Clinic
- Rochester Hotels
- Blooming Prairie Hotels
- Lgbt Friendly Hotels in Northrup
- Even Hotel Rochester
- Family Hotels in Rochester
- Hotels near Mayo Clinic
- St. Charles Hotels
- Cabin Rentals in Rochester
- Hotels near Mayo Clinic Hospital - Saint Marys Campus
- B&B in Hayfield
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- All Inclusive Resorts and in Rochester
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- The Berkman
- Hotel Indigo Rochester – Mayo Clinic Area by IHG
- Hotels with Free Airport Shuttle in Rochester
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- Welch Hotels
- Pine Island Hotels
- Hotels near Minneapolis - St. Paul Intl.
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