Find hotels in Southeast Minnesota, MN from CA $91
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Sep 12 - Sep 13Tomorrow
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Sep 25 - Sep 27Our top choices for Southeast Minnesota hotels
1. Hampton Inn & Suites Rochester-North
Hampton Inn & Suites Rochester-NorthRochester
Dr. Tim
CA $142
CA $164 total
includes taxes & fees
Sep 27 - Sep 28
2. Hyatt House Rochester/Mayo Clinic Area
Hyatt House Rochester/Mayo Clinic AreaDowntown Rochester
Kathy
CA $163
CA $188 total
includes taxes & fees
Oct 2 - Oct 3
3. Comfort Inn & Suites Rochester South Mayo Clinic
Comfort Inn & Suites Rochester South Mayo ClinicRochester
Richard
CA $108
CA $124 total
includes taxes & fees
Oct 11 - Oct 12
4. Best Western Rochester Hotel Mayo Clinic Area/St. Mary's
Best Western Rochester Hotel Mayo Clinic Area/St. Mary'sRochester
Margita
CA $130
CA $150 total
includes taxes & fees
Sep 21 - Sep 22
5. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys
Fairfield Inn & Suites Rochester Mayo Clinic Area/St. MarysKutzky Park
Jon
CA $155
CA $178 total
includes taxes & fees
Sep 18 - Sep 19
6. Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHG
Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHGKutzky Park
Janet
CA $140
CA $161 total
includes taxes & fees
Sep 18 - Sep 19
7. AmericInn by Wyndham Rochester Near Mayo Clinic
AmericInn by Wyndham Rochester Near Mayo ClinicRochester
Cathy
CA $105
CA $121 total
includes taxes & fees
Sep 13 - Sep 14
8. Comfort Inn & Suites West - Medical Center
Comfort Inn & Suites West - Medical CenterRochester
Gary
CA $114
CA $132 total
includes taxes & fees
Sep 19 - Sep 20
9. Hotel Indigo Rochester – Mayo Clinic Area by IHG
Hotel Indigo Rochester – Mayo Clinic Area by IHGDowntown Rochester
Kyle
CA $148
CA $171 total
includes taxes & fees
Sep 25 - Sep 26
10. Home2 Suites by Hilton Rochester Mayo Clinic Area
Home2 Suites by Hilton Rochester Mayo Clinic AreaRochester
Vickie
CA $169
CA $195 total
includes taxes & fees
Oct 9 - Oct 10
11. Hampton Inn Rochester-South
Hampton Inn Rochester-SouthRochester
dennis
CA $147
CA $169 total
includes taxes & fees
Sep 27 - Sep 28
12. Treasure Island Resort & Casino
Treasure Island Resort & CasinoWelch
James
CA $109
CA $136 total
includes taxes & fees
Sep 20 - Sep 21
13. TownePlace Suites by Marriott Rochester Mayo Clinic Area
TownePlace Suites by Marriott Rochester Mayo Clinic AreaKutzky Park
Hafsa
CA $190
CA $218 total
includes taxes & fees
Oct 2 - Oct 3
14. EVEN Hotel Rochester - Mayo Clinic Area by IHG
EVEN Hotel Rochester - Mayo Clinic Area by IHGKutzky Park
Amuor
CA $169
CA $213 total
includes taxes & fees
Oct 2 - Oct 3
15. Residence Inn by Marriott Rochester Mayo Clinic Area South
Residence Inn by Marriott Rochester Mayo Clinic Area SouthRochester
CA $183
CA $210 total
includes taxes & fees
Oct 2 - Oct 3
16. Holiday Inn Express Rochester South - Mayo Area by IHG
Holiday Inn Express Rochester South - Mayo Area by IHGRochester
Dezel
CA $133
CA $153 total
includes taxes & fees
Sep 20 - Sep 21
17. Hilton Rochester Mayo Clinic Area
Hilton Rochester Mayo Clinic AreaDowntown Rochester
Jennifer
CA $249
CA $287 total
includes taxes & fees
Sep 18 - Sep 19
18. Staybridge Suites Rochester - Commerce Dr NW by IHG
Staybridge Suites Rochester - Commerce Dr NW by IHGRochester
Tamra
CA $184
CA $212 total
includes taxes & fees
Sep 18 - Sep 19
19. Baymont by Wyndham Kasson Rochester Area
Baymont by Wyndham Kasson Rochester AreaKasson
Bryce
CA $85
CA $91 total
includes taxes & fees
Sep 27 - Sep 28
20. Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area
Centerstone Plaza Hotel Soldiers Field - Mayo Clinic AreaHistoric Southwest
Carrie
CA $149
CA $172 total
includes taxes & fees
Sep 20 - Sep 21
Stay near popular Southeast Minnesota attractions
Photo by T. Jen
Forestville Mystery Cave State Park
9.0/10 (22 reviews)
Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.
Photo by Linda Strub
Niagara Cave
9.2/10 (23 reviews)
Commune with nature and explore the great outdoors at Niagara Cave during your travels in Harmony. Amble within the natural setting or visit the churches in this family-friendly area.
Mayo Civic Center
9.2/10 (818 reviews)
Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.
Apache Mall
8.6/10 (1,101 reviews)
During your visit to Rochester, you can do some window-shopping at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Rochester Recreation Center
8.0/10 (205 reviews)
Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
National Volleyball Center
7.8/10 (151 reviews)
Catch an event at National Volleyball Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Shattuck-St. Mary's School
9.6/10 (69 reviews)
Enjoy the collegiate vibe when you visit Shattuck-St. Mary's School, during your trip to Faribault. Visit the shops in this family-friendly area, or simply enjoy its coffeehouses.
Olmsted County Fairgrounds
7.8/10 (177 reviews)
Take the family on an outing to Olmsted County Fairgrounds during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Learn more about Southeast Minnesota
Explore the family-friendly area of Southeast Minnesota—restaurants, sports teams, and sights from Mayowood Mansion to Apache Mall.
See all hotels in Southeast Minnesota
Photo by Amy Jo Marks
Top Southeast Minnesota Hotel Reviews
La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S
8/10 Good
"👍 good stay. Will recommend"
Hyatt House Rochester/Mayo Clinic Area
10/10 Excellent
"Staff was very helpful"
Best Western Rochester Hotel Mayo Clinic Area/St. Mary's
10/10 Excellent
"Beautiful hotel and rooms, very clean and updated! The kids loved the pool area but the large slide and bball Goal was out of order so a little disappointed, however, we overall enjoyed our room it was very spacious!"
Kahler Grand Hotel
8/10 Good
"Unfortunately our original reservation was lost due to a computer shutdown. A new reservation was made but not at the original discounted price. The hotel staff was very pleasant, especially the valet staff!"
Express Suites Riverport Inn & Suites
8/10 Good
"Clean room. Friendly staff. Nice indoor pool. A bit pricey but not as bad as holiday inn."
EVEN Hotel Rochester - Mayo Clinic Area by IHG
10/10 Excellent
"It’s a beautiful place to stay while you’re in town. Just be mindful about the parking, and road constructions which aren’t their faults"
St James Hotel, a Historic Hotel of America
10/10 Excellent
"Lovely room! Great view of river. Close to train tracks, but noise is not noticeable. Dinner in the hotel restaurant was delicious."
Med City Inn & Suites - Mayo Clinic Area
8/10 Good
"Very good stay. I found the wifi to be excellent and the motel was served by a free shuttle to the Mayo Clinic. I have stayed here several times in the past and like the property. It is also directly connected to Famous Dave's Bar-B-Que where guests receive a discount."
SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys
8/10 Good
"Good"
More cheap stays in Southeast Minnesota
Birch Hill Suite Rochester – Med City
3595 Commercial Drive SW Rochester MN
CA $80
CA $92 total
Oct 5 - Oct 6
includes taxes & fees
Super 8 by Wyndham Winona MN
1025 Sugar Loaf Rd Winona MN
CA $85
CA $96 total
Sep 20 - Sep 21
includes taxes & fees
7.6/10 Good! (1,000 reviews)
Med City Inn & Suites - Mayo Clinic Area
435 16th Ave Nw Rochester MN
CA $99
CA $114 total
Sep 20 - Sep 21
includes taxes & fees
7.8/10 Good! (1,013 reviews)
Boarders Inn & Suites by Cobblestone Hotels - Faribault
1801 Lavender Dr Faribault MN
CA $106
CA $117 total
Sep 20 - Sep 21
includes taxes & fees
Cobblestone Hotel & Suites - Austin
1000 16th Avenue NW Austin MN
CA $111
CA $123 total
Sep 20 - Sep 21
includes taxes & fees
8.8/10 Excellent! (797 reviews)
Best Western Rochester Hotel Mayo Clinic Area/St. Mary's
1517 16th St Sw Rochester MN
CA $130
CA $150 total
Sep 21 - Sep 22
includes taxes & fees
8.2/10 Very good! (1,001 reviews)
Hotels in Southeast Minnesota with star rating
4 Star Hotels
8 properties
3 Star Hotels
111 properties
2 Star Hotels
86 properties
Explore a world of travel with Expedia
- Motels in Rochester
- Luxury King Suite—Steps from Mayo Clinic Hospital
- Med City Inn & Suites
- Spa Hotels in Rochester
- Hyatt House Rochester/Mayo Clinic Area
- Northfield Hotels
- Hotels with Balconies in Rochester
- Morristown Hotels
- Reads Landing Hotels
- Austin Hotels
- Geneva Hotels
- Luxury Hotels in Rochester
- Bloomington Hotels
- Hotels with Waterslides in Rochester
- Wabasha Hotels
- Faribault Hotels
- Cheap Hotels in Rochester
- Vacation Homes in Wanamingo
- Hotels near Mall of America
- Mayo Discount! 4 bed
- Cannon Falls Hotels
- Hotels near Shattuck-St. Mary's School
- Dodge Center Hotels
- Hotels near St. Olaf College
- Hostels in Rochester
- Kasson Hotels
- Hotels near Spam Museum
- Staybridge Suites Rochester
- B&B in Kasson
- Owatonna Hotels
- Red Wing Hotels
- Spark by Hilton Rochester South
- Waterpark Hotels in Rochester
- Quality Inn near Medical Center
- Upscale King Suite—Steps from Mayo Clinic Hospital
- Lake City Hotels
- Comfort Inn & Suites Rochester South Mayo Clinic
- Rochester Hotels
- Blooming Prairie Hotels
- Lgbt Friendly Hotels in Northrup
- Even Hotel Rochester
- Family Hotels in Rochester
- Hotels near Mayo Clinic
- St. Charles Hotels
- Cabin Rentals in Rochester
- Hotels near Mayo Clinic Hospital - Saint Marys Campus
- B&B in Hayfield
- Stewartville Hotels
- Albert Lea Hotels
- Farmington Hotels
- All Inclusive Resorts and in Rochester
- Dundas Hotels
- Hotels with Kitchenettes in Rochester
- Condo Rentals in Concord
- The Berkman
- Hotel Indigo Rochester – Mayo Clinic Area by IHG
- Hotels with Free Airport Shuttle in Rochester
- Pet-Friendly Hotels in Rochester
- Welch Hotels
- Pine Island Hotels
- Hotels near Minneapolis - St. Paul Intl.
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