Hotels in Mission Bay, San Diego from CA $91

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
Nov 14 - Nov 15
Tomorrow
Nov 15 - Nov 16
Next weekend
Nov 20 - Nov 22
In two weeks
Nov 27 - Nov 29

Filter by

Property class

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Mission Bay hotels

A pathway flanked by lush tropical plants and a stone statue.

1. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,495 reviews)
"Wonderful staff, nice amenities, good food, beautiful view!"
United States
Steven
The price is CA $224
CA $299 total
includes taxes & fees
Dec 10 - Dec 11
The Dana on Mission Bay
A spacious living area with a high ceiling, large windows, a dining table, and a sofa.

2. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,677 reviews)
"Amazing rooms and service!!"
United States
Aaroosh
The price is CA $251
CA $364 total
includes taxes & fees
Nov 29 - Nov 30
San Diego Mission Bay Resort
A resort pool with a lazy river, palm trees, and a view of the ocean.

3. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,627 reviews)
"Beautiful and the breakfast was delicious!"
United States
Megan
The price is CA $240
CA $351 total
includes taxes & fees
Dec 1 - Dec 2
Hyatt Regency Mission Bay Spa and Marina
A modern building with a curved roof, surrounded by lush tropical vegetation.

4. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,979 reviews)
"Loved staying at Paradise Point!"
United States
victor
The price is CA $284
CA $402 total
includes taxes & fees
Dec 13 - Dec 14
Paradise Point Resort & Spa
A hotel with a central courtyard, palm trees, and a fountain.

5. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,561 reviews)
"Great stay."
United States
Christopher
The price is CA $154
CA $177 total
includes taxes & fees
Dec 6 - Dec 7
Hilton Garden Inn San Diego Old Town/SeaWorld Area
A hotel room with two beds, a desk, a chair, a TV, and a window with curtains.

6. Comfort Inn San Diego - SeaWorld Area

Comfort Inn San Diego - SeaWorld Area
3.5 star property
2.8 km from Mission Bay
8.6 out of 10, Excellent, (4,319 reviews)
"Staff was very friendly, rooms were gorgeous and clean, and breakfast was a hit! Definitely staying here again in the next San Diego trip!"
United States
Luis
The price is CA $146
CA $167 total
includes taxes & fees
Dec 7 - Dec 8
Comfort Inn San Diego - SeaWorld Area
A hotel entrance with a stone archway, a reception desk, and potted plants.

7. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,099 reviews)
"Great family hotel. Simple and clean yummy breakfast inexpensive and perfect for our short stay in sd"
United States
Alejandra
The price is CA $194
CA $223 total
includes taxes & fees
Nov 17 - Nov 18
Holiday Inn Express San Diego Airport - Old Town by IHG
A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

8. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
5.6 km from Mission Bay
8.4 out of 10, Very good, (2,117 reviews)
"Clean rooms, great breakfast"
United States
Elizabeth
The price is CA $156
CA $178 total
includes taxes & fees
Nov 16 - Nov 17
Best Western Yacht Harbor Hotel
A modern hotel reception area with a marble counter, a 'Welcome to Hampton' sign, and a reception desk.

9. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,490 reviews)
"The breakfast was amazing!"
United States
David
The price is CA $193
CA $222 total
includes taxes & fees
Nov 23 - Nov 24
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
A spacious hotel lobby with a high ceiling, a fireplace, and a dining area with multiple tables and chairs.

10. Fairfield Inn & Suites San Diego Old Town

Fairfield Inn & Suites San Diego Old Town
3.0 star property
Old Town San Diego, 4.1 km from Mission Bay
8.8 out of 10, Excellent, (1,224 reviews)
"great Breakfast and Great Location"
United States
Daniel
The price is CA $187
CA $215 total
includes taxes & fees
Dec 15 - Dec 16
Fairfield Inn & Suites San Diego Old Town
A GreenTree Inn building with a green sign, surrounded by well-maintained landscaping and palm trees.

11. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,460 reviews)
"Great stay!"
United States
Arman
The price is CA $149
CA $171 total
includes taxes & fees
Nov 19 - Nov 20
GreenTree Inn San Diego Mission Bay
An outdoor lounge area with seating, a fire feature, and a view of the building's interior.

12. Hampton Inn San Diego/Mission Valley

Hampton Inn San Diego/Mission Valley
2.5 star property
4.3 km from Mission Bay
8.6 out of 10, Excellent, (1,824 reviews)
"Great location, quiet, great breakfast , would stay there again."
United States
Blake Douglas
The price is CA $193
CA $222 total
includes taxes & fees
Nov 23 - Nov 24
Hampton Inn San Diego/Mission Valley
A hotel room with a large bed, a TV, a desk, and a door leading to a balcony.

13. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 star property
3.6 km from Mission Bay
8.0 out of 10, Very good, (3,107 reviews)
"Clean and spacious room, good breakfast, nice staff."
United States
Antonia
The price is CA $182
CA $210 total
includes taxes & fees
Dec 10 - Dec 11
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
An outdoor seating area with fire pits, lounge chairs, and a modern building in the background.

14. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.2 km from Mission Bay
8.8 out of 10, Excellent, (1,749 reviews)
"Clean room, very friendly staff, great breakfast."
United States
Edith
The price is CA $209
CA $240 total
includes taxes & fees
Dec 1 - Dec 2
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
A multi-story hotel with a lobby, outdoor seating, and a well-lit entrance.

15. The Alcala Hotel Mission Valley/Seaworld

The Alcala Hotel Mission Valley/Seaworld
2.5 star property
3.6 km from Mission Bay
8.0 out of 10, Very good, (1,002 reviews)
"Great stay !"
United States
David
The price is CA $102
CA $118 total
includes taxes & fees
Dec 14 - Dec 15
The Alcala Hotel Mission Valley/Seaworld
Room

16. Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 4 km from Mission Bay
8.2 out of 10, Very good, (2,086 reviews)
"A great stay and very close to the airport for those frequent trips"
United States
Ernesto
The price is CA $142
CA $163 total
includes taxes & fees
Dec 15 - Dec 16
Comfort Inn San Diego Old Town
A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

17. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
8.8 out of 10, Excellent, (1,009 reviews)
"Would stay again, my kids enjoyed the room . Hotel it close to lots of restaurants and sea worlds , minutes away from mission beach ."
United States
Jose
The price is CA $170
CA $195 total
includes taxes & fees
Dec 15 - Dec 16
Holiday Inn Express San Diego - SeaWorld Area by IHG
A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

18. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (2,056 reviews)
"Wonderful place to stay!!"
Canada
Anne
The price is CA $195
CA $224 total
includes taxes & fees
Dec 15 - Dec 16
Old Town Inn
A hotel lobby with a waterfall feature, outdoor seating area, and multiple floors with balconies.

19. Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4 km from Mission Bay
8.4 out of 10, Very good, (1,512 reviews)
"Had a good stay"
United States
Yesenia
The price is CA $157
CA $181 total
includes taxes & fees
Nov 17 - Nov 18
Crowne Plaza San Diego - Mission Valley by IHG
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

20. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,742 reviews)
"Very clean property and helpful, friendly staff."
United States
Dean
The price is CA $217
CA $250 total
includes taxes & fees
Nov 22 - Nov 23
Hampton Inn & Suites San Diego Airport Liberty Station
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels in Mission Bay

Property
Star rating
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
A pathway flanked by lush tropical plants and a stone statue.
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,495 reviews
View
A modern building with a curved roof, surrounded by lush tropical vegetation.
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,979 reviews
View
A spacious living area with a high ceiling, large windows, a dining table, and a sofa.
San Diego Mission Bay Resort
4.0 star property
8.6
Excellent
1,677 reviews
View
A resort pool with a lazy river, palm trees, and a view of the ocean.
Hyatt Regency Mission Bay Spa and Marina
4.0 star property
8.4
Very good
1,627 reviews
View
A beach view with a palm tree, a covered area with people, and a building with a sloped roof.
The Beach Cottages
2.5 star property
9.4
Exceptional
1,001 reviews
View

Hotels recommended for families in Mission Bay

A pathway flanked by lush tropical plants and a stone statue.

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,495)
The price is CA $224
CA $299 total
includes taxes & fees
Dec 10 - Dec 11
The Dana on Mission Bay

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most. Learn more about Mission Bay
Learn more about Mission Bay
A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.
A pier extending into the ocean with buildings at the end, under a partly cloudy sky.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.
A theater marquee with ornate designs and the name "Gaslamp Quarter".

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.
A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.
A coastal walkway with a statue, benches, and people.

Point Loma

This seaside hilly peninsula offers marine recreation, yachting, and whale watching. Explore Cabrillo National Monument, Old Point Loma Lighthouse, and Sunset Cliffs Natural Park. Enjoy local shops and eateries at Liberty Station and Point Loma Village.

Top Mission Bay Hotel Reviews

A beach view with a palm tree, a covered area with people, and a building with a sloped roof.
The Beach Cottages

The Beach Cottages

The Beach Cottages
Pacific Beach

10/10 Excellent

Super nice staff. Good room right next to the beach and close to the pacific beach action.
Canada
Raphael
Reviewed May 16, 2026
The Beach Cottages

Frequently Asked Questions

What is Mission Bay like?

You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.

What's a favorite hotel to stay in Mission Bay?

Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and San Diego Mission Bay Resort.

How many hotels should I expect to find in Mission Bay?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 37 Mission Bay hotels and other accommodations to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.

Where can I learn more about changing or cancelling my trip to Mission Bay?

To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.

What is there to do around this San Diego neighborhood?

Enjoy a stroll along the shore at Ski Beach, Mission and Pacific Beaches, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighborhood. Don't miss favorite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot, and Hotel Circle. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.