Hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (2,455 reviews)
"Clean Rooms, staff very friendly, very relaxing place "
United States
AlmaDelia
The price is CA $270
CA $382 total
includes taxes & fees
Apr 5 - Apr 6
Paradise Point Resort & Spa

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,367 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is CA $351
CA $476 total
includes taxes & fees
Mar 15 - Mar 16
San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,613 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is CA $257
CA $367 total
includes taxes & fees
Apr 5 - Apr 6
Hyatt Regency Mission Bay Spa and Marina

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,155 reviews)
"Great location and grounds!"
United States
Ethan
The price is CA $230
CA $295 total
includes taxes & fees
Apr 5 - Apr 6
The Dana on Mission Bay

Courtyard by Marriott San Diego El Cajon

Courtyard by Marriott San Diego El Cajon
3.0 star property
24.5 km from Mission Bay
9.2 out of 10, Wonderful, (1,010 reviews)
"Clean, quiet, beautiful "
United States
Attia
The price is CA $236
CA $260 total
includes taxes & fees
Mar 29 - Mar 30
Courtyard by Marriott San Diego El Cajon

Best Western Plus La Mesa San Diego

Best Western Plus La Mesa San Diego
2.5 star property
21.6 km from Mission Bay
8.4 out of 10, Very good, (1,013 reviews)
"Room was clean, pleasant staff and great breakfast "
United States
Wendy
The price is CA $162
CA $178 total
includes taxes & fees
Mar 15 - Mar 16
Best Western Plus La Mesa San Diego

SpringHill Suites by Marriott Chula Vista Eastlake

SpringHill Suites by Marriott Chula Vista Eastlake
3.5 star property
28.5 km from Mission Bay
9.6 out of 10, Exceptional, (587 reviews)
"Clean room and friendly staff "
United States
Michael
The price is CA $232
CA $256 total
includes taxes & fees
Mar 22 - Mar 23
SpringHill Suites by Marriott Chula Vista Eastlake

Ayres Hotel San Diego South - Chula Vista

Ayres Hotel San Diego South - Chula Vista
3.0 star property
29.6 km from Mission Bay
9.8 out of 10, Exceptional, (1,122 reviews)
"Great location "
United States
Irma
Ayres Hotel San Diego South - Chula Vista

Lamplighter Inn & Suites at SDSU

Lamplighter Inn & Suites at SDSU
2.5 star property
15.3 km from Mission Bay
9.0 out of 10, Wonderful, (1,366 reviews)
"Good accommodations for the price point."
United States
Martin
The price is CA $193
CA $217 total
includes taxes & fees
Mar 11 - Mar 12
Lamplighter Inn & Suites at SDSU

La Quinta Inn by Wyndham San Diego Chula Vista

La Quinta Inn by Wyndham San Diego Chula Vista
3.0 star property
20.7 km from Mission Bay
8.6 out of 10, Excellent, (1,557 reviews)
"The room was very clean and the staff was very nice."
United States
Rod
The price is CA $136
CA $150 total
includes taxes & fees
Apr 5 - Apr 6
La Quinta Inn by Wyndham San Diego Chula Vista

Best Western Americana Inn

Best Western Americana Inn
2.5 star property
28.6 km from Mission Bay
9.0 out of 10, Wonderful, (1,225 reviews)
"Great stay"
United States
Elisa
The price is CA $160
CA $182 total
includes taxes & fees
Mar 22 - Mar 23
Best Western Americana Inn

Sonesta ES Suites San Diego - Sorrento Mesa

Sonesta ES Suites San Diego - Sorrento Mesa
3.0 star property
15.1 km from Mission Bay
8.4 out of 10, Very good, (1,011 reviews)
"We really enjoyed our stay. Price was so reasonable are room was so nice with great amenities "
United States
Roy
The price is CA $168
CA $194 total
includes taxes & fees
Mar 22 - Mar 23
Sonesta ES Suites San Diego - Sorrento Mesa

Hotel Palmeras Chula Vista

Hotel Palmeras Chula Vista
2.0 star property
19.4 km from Mission Bay
7.2 out of 10, Good, (2,186 reviews)
"Good stay, quiet,place was easy to find."
United States
Annie
The price is CA $86
CA $94 total
includes taxes & fees
Mar 22 - Mar 23
Hotel Palmeras Chula Vista

Holiday Inn Express San Diego South - Chula Vista by IHG

Holiday Inn Express San Diego South - Chula Vista by IHG
2.5 star property
19.3 km from Mission Bay
9.4 out of 10, Exceptional, (1,051 reviews)
"Clean, Spacious Room, Polite Staff, Nice Breakfast"
United States
ALFREDO
The price is CA $208
CA $228 total
includes taxes & fees
Mar 22 - Mar 23
Holiday Inn Express San Diego South - Chula Vista by IHG

Hercor Hotel - Urban Boutique

Hercor Hotel - Urban Boutique
3.0 star property
20.4 km from Mission Bay
8.6 out of 10, Excellent, (1,393 reviews)
"Excellent service and spotless place. "
United States
Ruslan
The price is CA $135
CA $149 total
includes taxes & fees
Apr 2 - Apr 3
Hercor Hotel - Urban Boutique

Berkshire Motor Hotel

Berkshire Motor Hotel
2.5 star property
North Park, 8.3 km from Mission Bay
8.4 out of 10, Very good, (1,000 reviews)
"Clean, very chill easy check in"
United States
Susana
The price is CA $122
CA $138 total
includes taxes & fees
Mar 15 - Mar 16
Berkshire Motor Hotel

The Rambler Hotel

The Rambler Hotel
3.0 star property
19.2 km from Mission Bay
9.2 out of 10, Wonderful, (2,073 reviews)
"Absolutely amazing stay will def be coming back!"
United States
Victor
The price is CA $148
CA $171 total
includes taxes & fees
Mar 25 - Mar 26
The Rambler Hotel

Sun Outdoors San Diego Bay

Sun Outdoors San Diego Bay
2.0 star property
19 km from Mission Bay
10.0 out of 10, Exceptional, (88 reviews)
"Friendly staff, cute cottages, a lot of things to do. "
United States
Akiko
The price is CA $290
CA $364 total
includes taxes & fees
Apr 9 - Apr 10
Sun Outdoors San Diego Bay

Best Western Plus Marina Gateway Hotel

Best Western Plus Marina Gateway Hotel
3.5 star property
16.7 km from Mission Bay
9.2 out of 10, Wonderful, (3,767 reviews)
"My favorite place to stay"
United States
Rubidia
The price is CA $184
CA $202 total
includes taxes & fees
Mar 15 - Mar 16
Best Western Plus Marina Gateway Hotel

HYATT house San Diego/Sorrento Mesa

HYATT house San Diego/Sorrento Mesa
3.0 star property
14 km from Mission Bay
9.0 out of 10, Wonderful, (1,013 reviews)
"Good room, breakfast and firepit"
United States
Karla
The price is CA $195
CA $225 total
includes taxes & fees
Mar 20 - Mar 21
HYATT house San Diego/Sorrento Mesa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most. Learn more about Mission Bay
Learn more about Mission Bay

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on Expedia customer reviews, Paradise Point Resort & Spa is the highest ranked property in Mission Bay. This resort offers a marina and 5 outdoor pools. Other favorite options in the area include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighborhood. Mission Beach, North Cove Beach, and Bahia Point Beach are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bay City Brewing Co. and Sail Bay are also worth a stop.