Title: Hotels by Independent in San Juan Island from CA $106 | Expedia.ca [San Juan Island Travel Guide](https://expedia.ca/San-Juan-Island.dx6054490)[Hotels in San Juan Island](https://expedia.ca/San-Juan-Island-Hotels.d6054490.Travel-Guide-Hotels)[Vacation Rentals in San Juan Island](https://expedia.ca/San-Juan-Island-Vacation-Rentals.d6054490.Travel-Guide-VacationRentals)[Flights to San Juan Island](https://expedia.ca/Cheap-Flights-To-San-Juan-Island.d6054490.Travel-Guide-Flights)[Things to do in San Juan Island](https://expedia.ca/Things-To-Do-In-San-Juan-Island.d6054490.Travel-Guide-Activities)[San Juan Island Car Rentals](https://expedia.ca/Car-Rentals-In-San-Juan-Island.d6054490.Car-Rental-Guide)[San Juan Island Vacation Packages](https://expedia.ca/San-Juan-Island.d6054490.Destination-Travel-Guides) ![San Juan Island which includes a bay or harbour, sailing and boating](https://images.trvl-media.com/place/1248/c87f5637-9933-4199-a829-107b6a04e0b2.jpg?impolicy=fcrop&w=1200&h=500&q=medium) ![](https://images.trvl-media.com/place/1248/c87f5637-9933-4199-a829-107b6a04e0b2.jpg?impolicy=fcrop&w=1200&h=500&q=medium) - ![](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__calendar_shield.svg) ### Change your mind Book hotels with free cancellation - ![](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__deals.svg) ### Treat yourself Sign in to save 10% or more on thousands of hotels [Sign in](https://www.expedia.ca/login) - ![](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__bed.svg) ### Be picky Search almost a million properties worldwide ## Check prices for these dates Tonight [Feb 16 - Feb 17](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2026-02-16&endDate=2026-02-17&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) Tomorrow [Feb 17 - Feb 18](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2026-02-17&endDate=2026-02-18&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) This weekend [Feb 20 - Feb 22](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2026-02-20&endDate=2026-02-22&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) Next weekend [Feb 27 - Mar 1](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2026-02-27&endDate=2026-03-01&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) ## Our top choices for San Juan Island Independent ![Front of property](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/e4b1417f.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Bar (on property)](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/2ed1f570.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Cottage, Kitchen, Sea View | View from room](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/b47b6810.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/785ac2f2.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Anacortes Ship Harbor Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Ship-Harbor-Inn.h1311525.Hotel-Information) Anacortes 9.0/10 Wonderful (1,005 reviews) "Great front desk agent! Very intimate environment and clean rooms..." ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Bill CA $121 CA $134 total includes taxes & fees Feb 22 - Feb 23 [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Ship-Harbor-Inn.h1311525.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/bb3f2332.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Cabin, Kitchenette](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/bba623b5.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/b0252a8f.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/e2eb8df2.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Auld Holland Inn [](https://www.expedia.ca/Oak-Harbor-Hotels-Auld-Holland-Inn.h1668426.Hotel-Information) Oak Harbor 8.2/10 Very good (1,005 reviews) "Always a great stay" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) James CA $118 CA $132 total includes taxes & fees Feb 18 - Feb 19 [](https://www.expedia.ca/Oak-Harbor-Hotels-Auld-Holland-Inn.h1668426.Hotel-Information) ![Lobby](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/28b1ef64.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Blackout drapes, free WiFi, bed sheets](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/65c90a75.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby sitting area](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/b15fdc7e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Gazebo](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/36b12a0a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Coachman Inn & Suites [](https://www.expedia.ca/Oak-Harbor-Hotels-Coachman-Inn-Suites.h1576.Hotel-Information) Oak Harbor 9.2/10 Wonderful (1,005 reviews) "Nice place to stay" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Craig CA $166 CA $185 total includes taxes & fees Feb 19 - Feb 20 [](https://www.expedia.ca/Oak-Harbor-Hotels-Coachman-Inn-Suites.h1576.Hotel-Information) ![Cafe](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/ce853ab0.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Outdoor spa tub](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/7166daf1.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby sitting area](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/2ccf926d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/98210912.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Friday Harbor Suites [](https://www.expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) Friday Harbor 8.4/10 Very good (1,003 reviews) "Great room, great staff, love the hotel. This will be our go to for visits here! " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Nathaniel CA $237 CA $263 total includes taxes & fees Feb 28 - Mar 1 [](https://www.expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) ![Property grounds](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/69b37946.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Premium bedding, desk, laptop workspace, iron/ironing board](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/b478cd1e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/f26acb41.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/dff58a22.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Anacortes Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Inn.h8460818.Hotel-Information) Anacortes 8.8/10 Excellent (423 reviews) "Lovely room and the best staff. My second visit and I can positively recommend " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Valerie CA $135 CA $152 total includes taxes & fees Feb 23 - Feb 24 [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Inn.h8460818.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/a6aaee68.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Standard Room, 2 Queen Beds](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/fea7a302.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Room, 1 King Bed, Jetted Tub](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/3b703c33.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fitness facility](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/c750794e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### The Marina Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-The-Marina-Inn.h13137122.Hotel-Information) Anacortes 9.6/10 Exceptional (1,001 reviews) "Nice stay all around, staff, room and breakfast were all great." ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Marilyn CA $143 CA $161 total includes taxes & fees Feb 18 - Feb 19 [](https://www.expedia.ca/Mount-Vernon-Hotels-The-Marina-Inn.h13137122.Hotel-Information) ![Flat-screen TV, fireplace](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/f063d289.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Premium bedding, down comforters, pillowtop beds, blackout drapes](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/2e25c97a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/20132543.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Aerial view](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/a02970e7.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Snug Harbor Resort [](https://www.expedia.ca/Friday-Harbor-Hotels-Snug-Harbor-Resort.h34844071.Hotel-Information) Friday Harbor 9.8/10 Exceptional (454 reviews) "Great Winter get-away location. " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Nancy CA $281 CA $310 total includes taxes & fees Feb 19 - Feb 20 [](https://www.expedia.ca/Friday-Harbor-Hotels-Snug-Harbor-Resort.h34844071.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/4275dea4.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lounge](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/dc823c93.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby sitting area](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/687be17d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Mt. Baker Suite](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/50c45ad9.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Sunrise Inn Villas and Suites [](https://www.expedia.ca/Mount-Vernon-Hotels-Sunrise-Inn-Villas-And-Suites.h7758596.Hotel-Information) Anacortes 8.6/10 Excellent (684 reviews) "Great rooms and very friendly staff. " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Virginia CA $123 CA $152 total includes taxes & fees Mar 17 - Mar 18 [](https://www.expedia.ca/Mount-Vernon-Hotels-Sunrise-Inn-Villas-And-Suites.h7758596.Hotel-Information) ![Hypo-allergenic bedding, blackout drapes, iron/ironing board, free WiFi](https://images.trvl-media.com/lodging/67000000/66900000/66892300/66892217/ba84a198.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Front of property](https://images.trvl-media.com/lodging/67000000/66900000/66892300/66892217/212edbb0.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exclusive Room (Orcas Deluxe Suite) | Private kitchen](https://images.trvl-media.com/lodging/67000000/66900000/66892300/66892217/ddb9f222.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/67000000/66900000/66892300/66892217/c1ac144a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Salish Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-Salish-Inn.h66892217.Hotel-Information) Anacortes 8.4/10 Very good (611 reviews) "Really enjoyed the stay and will 100% be back. " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Ron CA $123 CA $159 total includes taxes & fees Feb 25 - Feb 26 [](https://www.expedia.ca/Mount-Vernon-Hotels-Salish-Inn.h66892217.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/26f01d23.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby sitting area](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/aebef7d2.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Deluxe Room, 2 Queen Beds](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/2ab1b3f4.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Hallway](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/fe8e7e61.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Anaco Bay Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-Anaco-Bay-Inn.h5765350.Hotel-Information) Anacortes 8.0/10 Very good (1,003 reviews) "Good value." ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Augustus CA $95 CA $106 total includes taxes & fees Feb 18 - Feb 19 [](https://www.expedia.ca/Mount-Vernon-Hotels-Anaco-Bay-Inn.h5765350.Hotel-Information) Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply. [View all properties](https://expedia.ca/Hotel-Search?startDate=2026-03-03&endDate=2026-03-04®ionId=6054490&adults=2&sort=RECOMMENDED&openPlayBack=true) ![](https://a.travel-assets.com/pricing-claim/sparkle_dark.svg) Save an average of 15% on thousands of hotels when you're signed in [Sign in ](https://expedia.ca/user/signin?ckoflag=0&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Island-Hotels-Independent.0-0-d6054490--bIndependent.Travel-Guide-Filter-Hotels)[ Sign up, it's free ](https://expedia.ca/signup?enable_registration=true&+=&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Island-Hotels-Independent.0-0-d6054490--bIndependent.Travel-Guide-Filter-Hotels) ## Top San Juan Island Hotel Reviews ![Anacortes Ship Harbor Inn](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/c6e1743f_y.jpg) ### Anacortes Ship Harbor Inn 10/10 Excellent "Clean and spacious room! Cute balcony with nice view of the islands. Quick check in and check out and a nice breakfast!" [](https://expedia.ca/Mount-Vernon-Hotels-Anacortes-Ship-Harbor-Inn.h1311525.Hotel-Information) ![Anacortes Inn](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/b20aae51_y.jpg) ### Anacortes Inn 10/10 Excellent "Great staff, clean room!" [](https://expedia.ca/Mount-Vernon-Hotels-Anacortes-Inn.h8460818.Hotel-Information) ![Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Mooring Buoy](https://images.trvl-media.com/lodging/34000000/33500000/33493900/33493802/0ca93884_y.jpg) ### Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Mooring Buoy 10/10 Excellent "Lovely stay at this house! Really enjoyed the house, the large yard, beautiful views of the bay, and the quiet peacefulness of the surroundings of roche harbor. The beds were comfortable, and the kitchen was very well stocked for cooking some meals at home. We saw seals, eagles roosting in nearby trees, and it was close to downtown Friday harbor. Great place! " [](https://expedia.ca/Friday-Harbor-Hotels-Waterfront-Home-Watch-A-Sunset-From-The-Hot-Tub.h33493802.Hotel-Information) ![Auld Holland Inn](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/bb3f2332_y.jpg) ### Auld Holland Inn 10/10 Excellent "It was great." [](https://expedia.ca/Oak-Harbor-Hotels-Auld-Holland-Inn.h1668426.Hotel-Information) ![Anaco Bay Inn](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/26f01d23_y.jpg) ### Anaco Bay Inn 10/10 Excellent "Good value." [](https://expedia.ca/Mount-Vernon-Hotels-Anaco-Bay-Inn.h5765350.Hotel-Information) ![Snug Harbor Resort](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/5b4be07d_y.jpg) ### Snug Harbor Resort 10/10 Excellent "Very clean, spacious and has everything you need to spend 2 or 3 days disconnecting from day to day life and connecting with nature. I’d love to come back again soon! Staff were very informative and friendly. " [](https://expedia.ca/Friday-Harbor-Hotels-Snug-Harbor-Resort.h34844071.Hotel-Information) ![Coachman Inn & Suites](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/90febc8a_y.jpg) ### Coachman Inn & Suites 10/10 Excellent "Clean room " [](https://expedia.ca/Oak-Harbor-Hotels-Coachman-Inn-Suites.h1576.Hotel-Information) ![Friday Harbor Suites](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/4322486e_y.jpg) ### Friday Harbor Suites 10/10 Excellent "Staff was the best and the beds were comfortable. " [](https://expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) ![The Marina Inn](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/e3c0d7e6_y.jpg) ### The Marina Inn 10/10 Excellent "Very friendly and helpful staff. Super clean and smells nice inside the bldg. Wide choices at breakfast. Very pleasant stay. Lots of parking and near amenities as it's on the main road for shops and restaurants in town. I would stay here again." 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