Title: Hotels by Independent in San Juan Island from CA $106 | Expedia.ca [San Juan Island Travel Guide](https://expedia.ca/San-Juan-Island.dx6054490)[Hotels in San Juan Island](https://expedia.ca/San-Juan-Island-Hotels.d6054490.Travel-Guide-Hotels)[Vacation Rentals in San Juan Island](https://expedia.ca/San-Juan-Island-Vacation-Rentals.d6054490.Travel-Guide-VacationRentals)[Flights to San Juan Island](https://expedia.ca/Cheap-Flights-To-San-Juan-Island.d6054490.Travel-Guide-Flights)[Things to do in San Juan Island](https://expedia.ca/Things-To-Do-In-San-Juan-Island.d6054490.Travel-Guide-Activities)[San Juan Island Car Rentals](https://expedia.ca/Car-Rentals-In-San-Juan-Island.d6054490.Car-Rental-Guide)[San Juan Island Vacation Packages](https://expedia.ca/San-Juan-Island.d6054490.Destination-Travel-Guides) ![San Juan Island which includes a bay or harbour, sailing and boating](https://images.trvl-media.com/place/1248/c87f5637-9933-4199-a829-107b6a04e0b2.jpg?impolicy=fcrop&w=1200&h=500&q=medium) # Find Hotels by Independent in San Juan Island from CA $106 - ![](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__calendar_shield.svg) ### Change your mind Book hotels with free cancellation - ![](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__deals.svg) ### Treat yourself Sign in to save 10% or more on thousands of hotels [Sign in](https://www.expedia.ca/login) - ![](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__bed.svg) ### Be picky Search almost a million properties worldwide ## Check prices for these dates Tonight [Dec 25 - Dec 26](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-12-25&endDate=2025-12-26&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) Tomorrow [Dec 26 - Dec 27](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-12-26&endDate=2025-12-27&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) This weekend [Dec 26 - Dec 28](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-12-26&endDate=2025-12-28&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) Next weekend [Jan 2 - Jan 4](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2026-01-02&endDate=2026-01-04&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) ## Our top choices for San Juan Island Independent ![Exterior](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/c6e1743f.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Suite | Living area](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/9be408ea.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/785ac2f2.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Bar (on property)](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/2ed1f570.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Anacortes Ship Harbor Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Ship-Harbor-Inn.h1311525.Hotel-Information) Anacortes 9.0/10 Wonderful (1001) "enjoyed my stay very much, thanks" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) todd CA $122 CA $135 total includes taxes & fees Jan 2 - Jan 3, 2026 [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Ship-Harbor-Inn.h1311525.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/bb3f2332.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Cabin, Kitchenette](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/bba623b5.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Staircase](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/1e1b4076.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/e2eb8df2.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Auld Holland Inn [](https://www.expedia.ca/Oak-Harbor-Hotels-Auld-Holland-Inn.h1668426.Hotel-Information) Oak Harbor 8.2/10 Very good (1001) "Lovely Inn! It’s my favorite place to stay when I am in Oak Harbor." ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Summer CA $119 CA $132 total includes taxes & fees Jan 5 - Jan 6, 2026 [](https://www.expedia.ca/Oak-Harbor-Hotels-Auld-Holland-Inn.h1668426.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/90febc8a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fridge, microwave, coffee/tea maker](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/93cf26e7.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/ac73321f.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fridge, microwave, coffee/tea maker](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/cb6ea832.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Coachman Inn & Suites [](https://www.expedia.ca/Oak-Harbor-Hotels-Coachman-Inn-Suites.h1576.Hotel-Information) Oak Harbor 9.2/10 Wonderful (1002) "Good place to stay." ![Canada](https://a.travel-assets.com/egds/marks/flags/ca.svg) Christine CA $159 CA $177 total includes taxes & fees Dec 27 - Dec 28 [](https://www.expedia.ca/Oak-Harbor-Hotels-Coachman-Inn-Suites.h1576.Hotel-Information) ![Front of property](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/4322486e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/b805211e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/98210912.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Courtyard](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/a1fca5a6.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Friday Harbor Suites [](https://www.expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) Friday Harbor 8.4/10 Very good (1000) "Great room, great staff, love the hotel. This will be our go to for visits here! " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Nathaniel CA $253 CA $280 total includes taxes & fees Dec 26 - Dec 27 [](https://www.expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) ![Superior Double Room](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/b20aae51.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/dff58a22.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Property grounds](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/69b37946.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Terrace/patio](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/25f6c831.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Anacortes Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Inn.h8460818.Hotel-Information) Anacortes 8.8/10 Excellent (415) "Great room and service!" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Channdara CA $135 CA $153 total includes taxes & fees Dec 28 - Dec 29 [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Inn.h8460818.Hotel-Information) ![Standard Room, 2 Queen Beds](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/e3c0d7e6.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fitness facility](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/c750794e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/a6aaee68.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/45229b5b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### The Marina Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-The-Marina-Inn.h13137122.Hotel-Information) Anacortes 9.6/10 Exceptional (1001) "Nice stay all around, staff, room and breakfast were all great." ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Marilyn CA $144 CA $162 total includes taxes & fees Dec 29 - Dec 30 [](https://www.expedia.ca/Mount-Vernon-Hotels-The-Marina-Inn.h13137122.Hotel-Information) ![Front of property](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/5b4be07d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Premium bedding, down comforters, pillowtop beds, blackout drapes](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/2e25c97a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Full-size fridge, oven, stovetop, coffee/tea maker](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/280d82e3.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Flat-screen TV, fireplace](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/f063d289.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Snug Harbor Resort [](https://www.expedia.ca/Friday-Harbor-Hotels-Snug-Harbor-Resort.h34844071.Hotel-Information) Friday Harbor 9.8/10 Exceptional (436) "The Best Resort on the island! - Waterfront, quiet, clean, friendly, cozy, all the amenities you could ask for. The most relaxing location you've ever been to. Once you arrive, you'll never want to leave. I will be coming back soon! " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Brock CA $282 CA $311 total includes taxes & fees Dec 28 - Dec 29 [](https://www.expedia.ca/Friday-Harbor-Hotels-Snug-Harbor-Resort.h34844071.Hotel-Information) ![King Villa | Private kitchen](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/e0287958.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lounge](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/dc823c93.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![King Villa | Private kitchen](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/fe21282b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/4275dea4.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Sunrise Inn Villas and Suites [](https://www.expedia.ca/Mount-Vernon-Hotels-Sunrise-Inn-Villas-And-Suites.h7758596.Hotel-Information) Anacortes 8.6/10 Excellent (679) "Great rooms and very friendly staff. " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Virginia CA $118 CA $146 total includes taxes & fees Jan 4 - Jan 5, 2026 [](https://www.expedia.ca/Mount-Vernon-Hotels-Sunrise-Inn-Villas-And-Suites.h7758596.Hotel-Information) ![Hypo-allergenic bedding, blackout drapes, iron/ironing board, free WiFi](https://images.trvl-media.com/lodging/67000000/66900000/66892300/66892217/ba84a198.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Front of property](https://images.trvl-media.com/lodging/67000000/66900000/66892300/66892217/212edbb0.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Outdoor spa tub](https://images.trvl-media.com/lodging/67000000/66900000/66892300/66892217/4db45e04.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Hair dryer, towels](https://images.trvl-media.com/lodging/67000000/66900000/66892300/66892217/3b29d34d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Salish Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-Salish-Inn.h66892217.Hotel-Information) Anacortes 8.4/10 Very good (604) "The beds were comfortable and sheets were soft. The room has all you need but very basic. Easy parking and location is good. " ![Canada](https://a.travel-assets.com/egds/marks/flags/ca.svg) Christina CA $132 CA $170 total includes taxes & fees Jan 2 - Jan 3, 2026 [](https://www.expedia.ca/Mount-Vernon-Hotels-Salish-Inn.h66892217.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/26f01d23.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fridge, microwave, coffee/tea maker](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/9b0a00d8.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Interior entrance](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/28776cd7.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby sitting area](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/aebef7d2.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Anaco Bay Inn [](https://www.expedia.ca/Mount-Vernon-Hotels-Anaco-Bay-Inn.h5765350.Hotel-Information) Anacortes 8.0/10 Very good (1002) "Great stay very comfortable room and the front desk gal was great!" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Jason CA $96 CA $106 total includes taxes & fees Dec 26 - Dec 27 [](https://www.expedia.ca/Mount-Vernon-Hotels-Anaco-Bay-Inn.h5765350.Hotel-Information) Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply. [View all properties](https://expedia.ca/Hotel-Search?startDate=2026-01-08&endDate=2026-01-09®ionId=6054490&adults=2&sort=RECOMMENDED&openPlayBack=true) ![](https://a.travel-assets.com/pricing-claim/sparkle_dark.svg) Save an average of 15% on thousands of hotels when you're signed in [Sign in ](https://expedia.ca/user/signin?ckoflag=0&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Island-Hotels-Independent.0-0-d6054490--bIndependent.Travel-Guide-Filter-Hotels)[ Sign up, it's free ](https://expedia.ca/signup?enable_registration=true&+=&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Island-Hotels-Independent.0-0-d6054490--bIndependent.Travel-Guide-Filter-Hotels) ## Top San Juan Island Hotel Reviews ![Coachman Inn & Suites](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/90febc8a_y.jpg) ### Coachman Inn & Suites 10/10 Excellent "The Coachman was so beautiful for Christmas time! When we arrived the lobby smelled like fresh baked cookies (which were delicious!) and was beautifully decorated, the front staff was very friendly! The room was huge and fit our needs perfectly. Breakfast was great with tons of choices, my son loved the French toast and yogurt, and my daughter loved the scrambled eggs and waffles!" [](https://expedia.ca/Oak-Harbor-Hotels-Coachman-Inn-Suites.h1576.Hotel-Information) ![Best Western Plus Oak Harbor Hotel & Conference Center](https://images.trvl-media.com/lodging/1000000/10000/7100/7085/w3837h2557x3y3-bbd59474_y.jpg) ### Best Western Plus Oak Harbor Hotel & Conference Center 10/10 Excellent "Clean room, comfortable bed. Good breakfast and convenient location." [](https://expedia.ca/Oak-Harbor-Hotels-Best-Western-Plus-Oak-Harbor-Hotel-Conference-Center.h7085.Hotel-Information) ![Anacortes Ship Harbor Inn](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/c6e1743f_y.jpg) ### Anacortes Ship Harbor Inn 10/10 Excellent "enjoyed my stay very much, thanks" [](https://expedia.ca/Mount-Vernon-Hotels-Anacortes-Ship-Harbor-Inn.h1311525.Hotel-Information) ![Earthbox Inn & Spa](https://images.trvl-media.com/lodging/2000000/1060000/1050900/1050864/57b4454b_y.jpg) ### Earthbox Inn & Spa 10/10 Excellent "Great place clean room. Nice people. " [](https://expedia.ca/Friday-Harbor-Hotels-Earthbox-Inn-Spa.h1050864.Hotel-Information) ![The Marina Inn](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/e3c0d7e6_y.jpg) ### The Marina Inn 10/10 Excellent "Good clean facilities " [](https://expedia.ca/Mount-Vernon-Hotels-The-Marina-Inn.h13137122.Hotel-Information) ![Friday Harbor House](https://images.trvl-media.com/lodging/11000000/10490000/10488900/10488823/739bad7d_y.jpg) ### Friday Harbor House 10/10 Excellent "Rooms were clean. Overall a very nice hotel. Will definitely stay again. " [](https://expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-House.h10488823.Hotel-Information) ![Auld Holland Inn](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/bb3f2332_y.jpg) ### Auld Holland Inn 10/10 Excellent "Lovely Inn! It’s my favorite place to stay when I am in Oak Harbor." [](https://expedia.ca/Oak-Harbor-Hotels-Auld-Holland-Inn.h1668426.Hotel-Information) ![Anaco Bay Inn](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/26f01d23_y.jpg) ### Anaco Bay Inn 10/10 Excellent "Great stay very comfortable room and the front desk gal was great!" [](https://expedia.ca/Mount-Vernon-Hotels-Anaco-Bay-Inn.h5765350.Hotel-Information) ![Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Mooring Buoy](https://images.trvl-media.com/lodging/34000000/33500000/33493900/33493802/0ca93884_y.jpg) ### Waterfront Home - Watch a Sunset from the Hot Tub, Private Beach, Mooring Buoy 10/10 Excellent "amazing house as always!" [](https://expedia.ca/Friday-Harbor-Hotels-Waterfront-Home-Watch-A-Sunset-From-The-Hot-Tub.h33493802.Hotel-Information) ## Explore a world of travel with Expedia - Lodging - Flights - Packages - Cars - Vacation Rental - Other - More ways to book - [5 Star Hotels in Friday Harbor ](https://www.expedia.ca/5Star-Friday-Harbor-Hotels.s50-0-d1248.Travel-Guide-Filter-Hotels) - [Best Western Hotels in Anacortes ](https://www.expedia.ca/Anacortes-Hotels-Best-Western.0-0-d2710--bBestWestern.Travel-Guide-Filter-Hotels) - [Marriott Hotels & Resorts in Anacortes ](https://www.expedia.ca/Anacortes-Hotels-Marriott-Hotels-Resorts.0-0-d2710--bMarriottHotelsResorts.Travel-Guide-Filter-Hotels) - [Motel 6 Hotels in Anacortes ](https://www.expedia.ca/Anacortes-Hotels-Motel-6.0-0-d2710--bMotel6.Travel-Guide-Filter-Hotels) - [Coast Hotels in Bellingham ](https://www.expedia.ca/Bellingham-Hotels-Coast-Hotels.0-0-d602922--bCoastHotels.Travel-Guide-Filter-Hotels) - [Hilton Hotels in Bellingham ](https://www.expedia.ca/Bellingham-Hotels-Hilton-Hotels.0-0-d602922--bHiltonHotels.Travel-Guide-Filter-Hotels) - 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