San Juan Island Vacation Packages

Book a Hotel + Flight or Car together to unlock savings

  • Plan, book, travel with confidence

  • Better together

    Save up to CA $4,200 when you book a flight and hotel together*

  • Find the right fit

    With over 300,000 hotels worldwide, it's easy to create a perfect package

  • Rest easy

    Plan, book, and manage your trip all in one place

Top San Juan Island Vacation Deals

Price found within the past 48 hours. Click for updated prices.
Hotel Murano

Hotel Murano

4.5 out of 5
Downtown Tacoma
Price was CA $1,452, price is now CA $1,055 per person
CA $1,055
per person
Jul 30 - Aug 3
found 1 day ago
Roundtrip non-stop flight included
Edmonton (YEG) to Seattle (SEA)
8.6/10 Excellent! (2,924 reviews)
Love this hotel always

Reviewed on Jun 1, 2026

1 Hotel Seattle

1 Hotel Seattle

5 out of 5
Downtown Seattle
Price was CA $4,449, price is now CA $2,543 per person
CA $2,543
per person
Aug 22 - Aug 29
found 1 day ago
Roundtrip non-stop flight included
Calgary (YYC) to Seattle (SEA)
9.4/10 Exceptional! (315 reviews)
Very modern hotel with a hip vibe, comfortable rooms (nice robes, comfortable bedding, nice tub and shower). The bar is very hip, the restaurant La Loba is excellent (delicious food and nice ambiance). You get free use of Dryp yoga studio across the street from the hotel, and it’s a great yoga studio. There is a mani / pedi nail salon nearby, and whole foods is right below. So very convenient.

Reviewed on May 30, 2026

Mediterranean Inn

Mediterranean Inn

3 out of 5
Downtown Seattle
Price was CA $1,959, price is now CA $1,350 per person
CA $1,350
per person
Jul 30 - Aug 3
found 1 day ago
Roundtrip non-stop flight included
Edmonton (YEG) to Seattle (SEA)
9.4/10 Exceptional! (5,887 reviews)
So close to cruise port and walking distance to restaurants for breakfast and the roof top views were amazing and relaxing to just sit out there and enjoy the sceneries.

Reviewed on Jun 3, 2026

The Belltown Inn

The Belltown Inn

2.5 out of 5
Downtown Seattle
Price was CA $1,798, price is now CA $1,258 per person
CA $1,258
per person
Jul 30 - Aug 3
found 1 day ago
Roundtrip non-stop flight included
Edmonton (YEG) to Seattle (SEA)
9.4/10 Exceptional! (4,522 reviews)
Just a few blocks off the waterfront. Plenty of dining in the area.

Reviewed on Jun 3, 2026

Willows Lodge

Willows Lodge

4 out of 5
Price was CA $1,850, price is now CA $1,365 per person
CA $1,365
per person
Aug 29 - Sep 1
found 3 hours ago
Roundtrip non-stop flight included
Edmonton (YEG) to Seattle (SEA)
9.8/10 Exceptional! (1,006 reviews)
Amazing stay! Super relaxing with the giant tub (nicer room) and patio to face coffee in the morning. Pet friendly property but we left out fur baby home. Popular place for smaller weddings (probably 80-120 people would be comfortable, but smaller areas would be good for an elopement). They have two pigs on site which were fun to go check out. The grounds were beautiful and we walked them multiple times. Lots of vineyards around. Across the street from Chateau Ste. Michelle. The lodge has bikes that are available for use and right next to a bike trail (no charge). They aren’t e-bikes. I’m an Expedia platinum member so we were welcomed with an easy to use $15 off meal voucher and a bottle of red blend wine.

Reviewed on May 26, 2026

Ready to book your vacation to San Juan Island?

 

Choose your dates

San Juan Island Hotel Deals

Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
The price is CA $272 per night from Jun 7 to Jun 8
CA $272
CA $301 total
Jun 7 - Jun 8
includes taxes & fees
8.6/10 Excellent! (1,000 reviews)
"Conveniently located, spacious rooms, good facilities make this hotel a better option to stay in Friday Harbor."

Reviewed on May 31, 2026

Friday Harbor Suites
The Orca Inn

The Orca Inn

2 out of 5
770 Mullis St Friday Harbor WA
Fully refundableReserve now, pay when you stay
The price is CA $183 per night from Jun 4 to Jun 5
CA $183
CA $203 total
Jun 4 - Jun 5
includes taxes & fees
8/10 Very Good! (9 reviews)
"The rooms are NY style, meaning they are small. But they were perfect for just the two of us, especially because we are shorter. The location was nice and away from things. Since we mainly used it just to sleep, this perfectly met our needs. Nice staff. Rooms were clean. Showers were hot. Each room ..."

Reviewed on Jun 1, 2026

The Orca Inn
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
Get rates
Inn to the Woods B&B
See all 860 properties in San Juan Island
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
All Inclusive Vacations
All Inclusive Vacations
Beach Vacations
Beach Vacations
Family Vacations
Family Vacations

Discover the most popular places to visit in San Juan Island

Lime Kiln Point State Park

Lime Kiln Point State Park

Also known as Whale Watch Park, this diving site is one of the best places in the world to view wild orca pods from the shore.

Lime Kiln Point State Park
San Juan County Park

San Juan County Park

A hotspot for kayakers, this scenic and diverse campsite is the perfect retreat for both those wanting to relax and adventurists.

San Juan County Park
Cape San Juan

Cape San Juan

Visit the Cattle Point Lighthouse and see if you can spot some seals at the southern tip of San Juan Island.

Cape San Juan

What to do in San Juan Island

Half Day Family Paddle and Hike

Half Day Family Paddle and Hike

CA $185
per adult
Half Day Family Paddle and Hike
Amazing Sunsets top of giant trees!

Sunset Canopy Climb on Lopez Island

CA $376
per adult
Sunset Canopy Climb on Lopez Island
Picture 2 for Activity Oak Bay: Full Moon Paddle Experience

Oak Bay: Full Moon Paddle Experience

CA $74
per adult
Oak Bay: Full Moon Paddle Experience
See all activities in San Juan Island

Frequently asked questions

Can I cancel my flight booking to San Juan Island due to COVID-19?
If you haven't booked yet, scan the terms and conditions of the airfare you're considering. If you've already locked in your flight to San Juan Island, click through to our Customer Service Portal. The information here will help determine which COVID-19 policies are applicable to your reservation and guide you with the next steps.
What's the best way to find cheap flights to San Juan Island that have flexible change policies?
At Expedia, we've been channeling our inner yoga master to provide you with the most flexible airfares in town. Simply click on "No change fee" directly beneath the "Flexible change policies" subheading to find your perfect flight to San Juan Island.
What are some of the general tips for travelers to San Juan Island during the COVID-19 outbreak?
With the continuation of the COVID-19 outbreak, traveling now comes with a few extra challenges. Make a note of these valuable tips before jumping on your plane to San Juan Island:
  • Before you book a flight, find out if any travel restrictions apply — in both your destination and origin. Get up-to-date information by reviewing government websites.
  • Wear a face mask during airport screening. A TSA employee will require you to lower your mask temporarily for identification purposes.
  • Instead of handing a TSA officer your boarding pass, place it directly on the reader yourself. When that's done, hold it up for inspection.
  • You can take one container of hand sanitizer up to 12 oz (350 ml) in your carry-on baggage. You'll need to remove it for screening.
  • Put any personal items (e.g, keys, phone and coins) in your carry-on instead of a bin to minimize handling during the screening process.
  • Separate any food you're carrying for X-ray scanning. Food items often set off the alarm. Placing them in a clear plastic bag and into a bin reduces the need for a TSA officer to handle and inspect your belongings.

Which airlines fly to San Juan Island?
Let Alaska Airlines get you there. This popular carrier operates 9722 flights a month to Seattle - Tacoma Intl. Airport (SEA), a San Juan Island gateway.
How can I find cheap tickets to San Juan Island?
A helpful strategy for scoring cheap fares is to be flexible with your travel dates. Begin with searching for your flight to San Juan Island, then click on the "flexible dates" link for a list of prices for nearby days. Another good tip? Book in advance. For an idea of fares, was the best price for a flight to San Juan Island in the last seven days.
How much is a flight to San Juan Island?
You could have scored a return air ticket to San Juan Island from anywhere between and in the last seven days. For one-way trips leaving from (), the lowest amount paid during this period was just .
What are the most popular airports to fly into in San Juan Island?
Pack your suitcase and fly into Seattle - Tacoma Intl. Airport (SEA), San Juan Island's main flight hub. Book a fare on one of the 17599 flights that touch down here every month.
When is the cheapest time to fly to San Juan Island?
If you'd prefer to spend your money exploring San Juan Island rather than on getting there, jet off early in the week. The cheapest day to fly is generally Tuesday, with Monday close behind. With many folks keeping their travel to weekends, Saturday often has the costliest airfares.
How much is a plane ticket to San Juan Island?
In the last seven days, plane fares to San Juan Island cost between and . The early bird catches the worm, so land yourself a great deal today.
Which airlines with flights to San Juan Island employ COVID-19 cleanliness policies?
As people begin traveling once again, the majority of airlines have introduced physical distancing and other preventive measures to reduce the spread of COVID-19. Here are just some of them:
  • Alaska Airlines - this airline is known for providing passenger masks and cleaning with disinfectant.
  • Delta - this airline is known for electrostatic cleaning and cleaning with disinfectant.
  • Southwest Airlines - this airline is known for providing passenger masks and cleaning with disinfectant.

Explore a world of travel with Expedia

* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.