Find Hotels by Independent in San Juan Islands
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check prices for these dates
Tonight
Sep 29 - Sep 30Tomorrow
Sep 30 - Oct 1This weekend
Oct 2 - Oct 4Next weekend
Oct 9 - Oct 11
Save an average of 15% on thousands of hotels when you're signed in
Top San Juan Islands Hotel Reviews
Friday Harbor Suites
10/10 Excellent
"This is such a wonderful property! The location is fantastic and the amenities are delightful. I stayed with my family in a 2 bedroom suite that they upgraded us to. They also gave us a delicious bottle of wine. The rooms and general space were squeaky clean. There are places for kids to play and the family to chill. I will definitely be coming back and highly recommend it to everyone visiting Friday Harbor!"
Trumpeter Inn
10/10 Excellent
"Nice quiet and friendly"
Lopez Islander Resort
10/10 Excellent
"Clean room Staff Bar"
Inn to the Woods B&B
10/10 Excellent
"It's a very charming property. My bed was very comfortable, and I had a private hot tub on the patio with a view of Egg Lake! Breakfast was delicious and thoughtful. There are two adorable dogs on the property which made me very happy!"
Landmark Inn on Orcas Island
10/10 Excellent
"Great location with amazing views. Vincent was super attentive and helpful. Very happy with this choice"
Outlook Inn
10/10 Excellent
"Great atmosphere!"
The Edenwild Boutique Inn
10/10 Excellent
"Beautiful place! Friendly staff. Great breakfast."
Deer Harbor Inn
8/10 Good
"It’s very basic considering the cost. The bed is very soft and not particularly comfortable with 2 people of different weights. Everything just felt a bit thrown together, which is ok but at this price point we had higher expectations."
West Beach Resort
10/10 Excellent
"Loved the privacy of the cabin and personal Hot tub"
Explore a world of travel with Expedia
- Houseboats in San Juan Islands
- Cabin Rentals in Orcas Island
- Bellingham Hotels
- Coast Hotels in Bellingham
- Deer Harbor Hotels
- Silver Reef Casino Resort
- Marriott Hotels & Resorts in Bellingham
- Lopez Island Hotels
- Condo Rentals in Friday Harbor
- Semiahmoo Resort Golf & Spa
- Motel 6 Hotels in Blaine
- Swinomish Casino & Lodge
- Cottages in Orcas Island
- Best Western Hotels in Sequim
- Sandman Hotels in Blaine
- B&B in Olga
- Hilton Hotels in Blaine
- Sandman Hotels in Bellingham
- Lgbt Friendly Hotels in Orcas Island
- Marriott Hotels & Resorts in Langley
- Best Western Hotels in Anacortes
- La Quinta Inn & Suites Hotels in Bells Beach
- Best Western Hotels in Birch Bay
- Rv Parks in Olga
- Best Western Hotels in Blaine
- Romantic Hotels in Orcas Island
- Marriott Hotels & Resorts in Port Angeles
- Best Western Hotels in Burlington
- B&B in Orcas Island
- Anacortes Hotels
- Inn to the Woods B&B
- Pet-Friendly Hotels in Orcas Island
- Best Western Hotels in Port Angeles
- La Quinta Inn & Suites Hotels in Langley
- La Quinta Inn & Suites Hotels in Blaine
- Motel 6 Hotels in Port Angeles
- Best Western Hotels in Mount Vernon
- Lodges in Shaw Island
- La Quinta Inn & Suites Hotels in Sedro-Woolley
- Friday Harbor Hotels
- Marriott Hotels & Resorts in Anacortes
- Wyndham Extra Holidays Hotels in Blaine
- Resorts in Friday Harbor
- Apartments in San Juan Islands
- Pet-Friendly Hotels in Friday Harbor
- La Quinta Inn & Suites Hotels in Mount Vernon
- Tulalip Resort Casino
- Cottages in Friday Harbor
- Marriott Hotels & Resorts in Oak Harbor
- Best Western Hotels in Lynden
- Motel 6 Hotels in Langley
- Hilton Hotels in Port Angeles
- Hilton Hotels in Sedro-Woolley
- Accor Hotels in Bellingham
- Hilton Hotels in Friday Harbor
- Flights from Friday Harbor
- Flights from Kenmore (KEH) to Friday Harbor (FBS)
- Flights to Lopez Island
- Flights from Orcas Island
- Flights from Seattle (SEA) to Friday Harbor (FBS)
- Flights to Orcas Island
- Flights from Vancouver (YVR) to Friday Harbor (FBS)
- Flights from Vancouver (YVR) to Friday Harbor (FRD)
- Flights from Bellingham (BLI) to Friday Harbor (FBS)
- Flights to Friday Harbor
- Flights from Walla Walla (ALW) to Friday Harbor (FBS)
- Flights from Victoria (YYJ) to Friday Harbor (FRD)
- Flights from Sidney (SDY) to Friday Harbor (FBS)
- Flights from Vancouver (YVR) to Bellingham (BLI)
- Flights from Palm Springs (PSP) to Friday Harbor (FBS)
- Flights from Sydney (SYD) to Friday Harbor (FBS)
- Flights from London (LHR) to Friday Harbor (FBS)
- Flights from Victoria (YYJ) to Friday Harbor (FBS)
- Flights from Toronto (YYZ) to Friday Harbor (FBS)
- Flights from Bellingham Intl.
- Flights from Edmonton (YEG) to Friday Harbor (FRD)
- Flights to San Juan Islands