Title: Hotels by Independent in San Juan Islands from CA $140 | Expedia.ca [San Juan Islands Travel Guide](https://expedia.ca/San-Juan-Islands.dx6023373)[Hotels in San Juan Islands](https://expedia.ca/San-Juan-Islands-Hotels.d6023373.Travel-Guide-Hotels)[Vacation Rentals in San Juan Islands](https://expedia.ca/San-Juan-Islands-Vacation-Rentals.d6023373.Travel-Guide-VacationRentals)[Flights to San Juan Islands](https://expedia.ca/Cheap-Flights-To-San-Juan-Islands.d6023373.Travel-Guide-Flights)[Things to do in San Juan Islands](https://expedia.ca/Things-To-Do-In-San-Juan-Islands.d6023373.Travel-Guide-Activities)[San Juan Islands Car Rentals](https://expedia.ca/Car-Rentals-In-San-Juan-Islands.d6023373.Car-Rental-Guide)[San Juan Islands Vacation Packages](https://expedia.ca/San-Juan-Islands.d6023373.Destination-Travel-Guides) ![](https://a.travel-assets.com/findyours-php/viewfinder/images/res70/47000/47912-San-Juan-Islands.jpg?impolicy=fcrop&w=1200&h=500&q=medium) # Find Hotels by Independent in San Juan Islands from CA $140 ![calendar shield illustration](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__calendar_shield.svg) ### Change your mind Book hotels with free cancellation ![deals illustration](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__deals.svg) ### Treat yourself Sign in to save 10% or more on thousands of hotels [Sign in](https://www.expedia.ca/login) ![bed illustration](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__bed.svg) ### Be picky Search almost a million properties worldwide ## Check prices for these dates Tonight [Sep 25 - Sep 26](https://www.expedia.ca/Hotel-Search?regionId=6023373&startDate=2025-09-25&endDate=2025-09-26&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) Tomorrow [Sep 26 - Sep 27](https://www.expedia.ca/Hotel-Search?regionId=6023373&startDate=2025-09-26&endDate=2025-09-27&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) This weekend [Sep 26 - Sep 28](https://www.expedia.ca/Hotel-Search?regionId=6023373&startDate=2025-09-26&endDate=2025-09-28&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) Next weekend [Oct 3 - Oct 5](https://www.expedia.ca/Hotel-Search?regionId=6023373&startDate=2025-10-03&endDate=2025-10-05&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) ## Top San Juan Islands Independent Hotels ## Our top choices for San Juan Islands Independent ![Front of property](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/4322486e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/b805211e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Cafe](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/ce853ab0.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Courtyard](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/a1fca5a6.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Friday Harbor Suites Friday Harbor 8.4/10 Very good (1000) "Great place to stay. " CA $266 CA $295 total includes taxes & fees Oct 25 - Oct 26 [](https://www.expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/d74d1a58.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Reception](https://images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/c1bf16ea.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Reception](https://images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/9acfff4b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Terrace/patio](https://images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/b540d356.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### The Orca Inn Friday Harbor 7.8/10 Good (1017) "Great stay" CA $126 CA $140 total includes taxes & fees Oct 25 - Oct 26 [](https://www.expedia.ca/Friday-Harbor-Hotels-The-Orca-Inn.h5784280.Hotel-Information) ![Front of property](https://images.trvl-media.com/lodging/2000000/1060000/1050900/1050864/57b4454b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Point of interest](https://images.trvl-media.com/lodging/2000000/1060000/1050900/1050864/d57c0554.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Point of interest](https://images.trvl-media.com/lodging/2000000/1060000/1050900/1050864/8b9ca74e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Point of interest](https://images.trvl-media.com/lodging/2000000/1060000/1050900/1050864/14b8b6b8.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Earthbox Inn & Spa Friday Harbor 8.8/10 Excellent (984) "The location is excellent, and the check-in and check-out process was very easy." CA $311 CA $345 total includes taxes & fees Oct 26 - Oct 27 [](https://www.expedia.ca/Friday-Harbor-Hotels-Earthbox-Inn-Spa.h1050864.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/52000000/51750000/51741500/51741445/1f1838dd.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Water view](https://images.trvl-media.com/lodging/52000000/51750000/51741500/51741445/a09c5412.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Outdoor wedding area](https://images.trvl-media.com/lodging/52000000/51750000/51741500/51741445/2ea4c127.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Dining](https://images.trvl-media.com/lodging/52000000/51750000/51741500/51741445/eb41c17f.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Lopez Islander Resort Lopez Island 8.4/10 Very good (347) "Great location" CA $220 CA $243 total includes taxes & fees Oct 26 - Oct 27 [](https://www.expedia.ca/Lopez-Island-Hotels-Lopez-Islander-Resort.h51741445.Hotel-Information) ![Exclusive Suite, 1 King Bed, Non Smoking, Sea View | Terrace/patio](https://images.trvl-media.com/lodging/106000000/105790000/105789400/105789342/e9d91a79.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Deluxe Room, Kitchenette, Sea View | Living area](https://images.trvl-media.com/lodging/106000000/105790000/105789400/105789342/175b71e1.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exclusive Suite, 1 King Bed, Non Smoking, Sea View | Living area](https://images.trvl-media.com/lodging/106000000/105790000/105789400/105789342/52df2f43.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Deluxe Suite, 2 Bedrooms, Hill View | Living area](https://images.trvl-media.com/lodging/106000000/105790000/105789400/105789342/w960h570x0y0-539cf7e4.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Rosario Village Eastsound 7.2/10 Good (69) "Miss the mansion. Also, key code did not work and we had to borrow another visitor's phone to contact office for a new code. They need management there. There were a few minor repairs needed in the bathroom; I took care of the squeaky hinges and tightened the toilet seat. Left the tub trim and TP holder for them. " CA $201 CA $256 total includes taxes & fees Oct 26 - Oct 27 [](https://www.expedia.ca/Eastsound-Hotels-Rosario-Village.h105789342.Hotel-Information) ![Room, 1 Queen Bed (View) | Balcony view](https://images.trvl-media.com/lodging/16000000/15100000/15099200/15099117/442e7e8a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Luxury Studio Suite, 1 King Bed, Balcony, Ocean View | Front of property](https://images.trvl-media.com/lodging/16000000/15100000/15099200/15099117/93c1981b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Egyptian cotton sheets, premium bedding, laptop workspace](https://images.trvl-media.com/lodging/16000000/15100000/15099200/15099117/2b080aca.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Deluxe Suite (Water´s Edge)](https://images.trvl-media.com/lodging/16000000/15100000/15099200/15099117/b32d4497.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Outlook Inn Eastsound 9.2/10 Wonderful (493) "Gorgeous views, relaxing, dog-friendly - everything we were looking for." CA $471 CA $540 total includes taxes & fees Oct 26 - Oct 27 [](https://www.expedia.ca/Eastsound-Hotels-Outlook-Inn-On-Orcas-Island.h15099117.Hotel-Information) ![Front of property](https://images.trvl-media.com/lodging/36000000/35120000/35113500/35113476/e43da03c.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Water View Condo | In-room dining](https://images.trvl-media.com/lodging/36000000/35120000/35113500/35113476/33b4a8ca.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Side View Condo | Private kitchen](https://images.trvl-media.com/lodging/36000000/35120000/35113500/35113476/ddb477bd.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Water View Condo | Private kitchen](https://images.trvl-media.com/lodging/36000000/35120000/35113500/35113476/a6322e9c.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Landmark Inn on Orcas Island Eastsound 9.4/10 Exceptional (177) "Excellent condo with a great view and everything needed for a great vacation." CA $298 CA $328 total includes taxes & fees Oct 26 - Oct 27 [](https://www.expedia.ca/Eastsound-Hotels-Landmark-Inn-On-Orcas-Island.h35113476.Hotel-Information) ![Comfort Suite, 1 King Bed, Balcony, Ocean View](https://images.trvl-media.com/lodging/17000000/16610000/16604300/16604230/3611a787.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Village Home - 4br - Evergreen | Private kitchen](https://images.trvl-media.com/lodging/17000000/16610000/16604300/16604230/0131e657.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![McMillin Suite - Top Floor | Living area](https://images.trvl-media.com/lodging/17000000/16610000/16604300/16604230/e4536c7f.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Front of property](https://images.trvl-media.com/lodging/17000000/16610000/16604300/16604230/7dfde5d5.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Roche Harbor Resort Friday Harbor 9.2/10 Wonderful (398) "Interesting historic and Beautiful place" CA $298 CA $345 total includes taxes & fees Oct 14 - Oct 15 [](https://www.expedia.ca/Friday-Harbor-Hotels-Roche-Harbor-Resort.h16604230.Hotel-Information) ![Front of property](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/5b4be07d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Full-size fridge, oven, stovetop, coffee/tea maker](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/280d82e3.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/20132543.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Premium bedding, down comforters, pillowtop beds, blackout drapes](https://images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/2e25c97a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Snug Harbor Resort Friday Harbor 9.8/10 Exceptional (409) "Loved our stay here!" CA $310 CA $342 total includes taxes & fees Oct 26 - Oct 27 [](https://www.expedia.ca/Friday-Harbor-Hotels-Snug-Harbor-Resort.h34844071.Hotel-Information) ![Cabin, 1 Bedroom, Hot Tub, Marina View (Deer Harbor Cottage #1)](https://images.trvl-media.com/lodging/2000000/1100000/1093000/1092961/05b29055.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Marina](https://images.trvl-media.com/lodging/2000000/1100000/1093000/1092961/214d70e1.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Room, 1 Bedroom, Fireplace, Marina View (Deer Harbor Inn #2) | View from property](https://images.trvl-media.com/lodging/2000000/1100000/1093000/1092961/81fd5607.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Room, 1 Bedroom, Fireplace, Marina View (Deer Harbor Inn #2) | Beach](https://images.trvl-media.com/lodging/2000000/1100000/1093000/1092961/5ab4843b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Deer Harbor Inn Deer Harbor 8.4/10 Very good (190) "We thoroughly enjoyed our stay at this cute hotel. Our room was clean, comfortable and quiet. I would definitely recommend anyone stay here if given the chance." CA $253 CA $279 total includes taxes & fees Oct 25 - Oct 26 [](https://www.expedia.ca/Deer-Harbor-Hotels-Deer-Harbor-Inn.h1092961.Hotel-Information) Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply. [View all properties](https://expedia.ca/Hotel-Search?startDate=2025-10-09&endDate=2025-10-10®ionId=6023373&adults=2&sort=RECOMMENDED&openPlayBack=true) ![](https://a.travel-assets.com/pricing-claim/sparkle_dark.svg) Save an average of 15% on thousands of hotels when you're signed in [Sign in](https://expedia.ca/user/signin?ckoflag=0&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Islands-Hotels-Independent.0-0-d6023373--bIndependent.Travel-Guide-Filter-Hotels)[Sign up, it's free](https://expedia.ca/signup?enable_registration=true&+=&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Islands-Hotels-Independent.0-0-d6023373--bIndependent.Travel-Guide-Filter-Hotels) ## Top San Juan Islands Hotel Reviews ![Modern Home with Stunning Water View](//images.trvl-media.com/lodging/23000000/22770000/22762100/22762061/3733dee1_y.jpg) ### Modern Home with Stunning Water View 10/10 Excellent "Beautiful home with a gorgeous VIEW!! This was the perfect choice for two couples, offering privacy with one bedroom downstairs, and a well-equipped kitchen. Our host was so helpful, providing tips, suggestions and some local insider knowledge! I hope to stay here again next year, and the year after that…5 stars!" [](https://expedia.ca/Eastsound-Hotels-Modern-Home-With-Stunning-Water-View.h22762061.Hotel-Information) ![Friday Harbor Suites](//images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/4322486e_y.jpg) ### Friday Harbor Suites 10/10 Excellent "Excellent experience!" [](https://expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) ![Snug Harbor Resort](//images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/5b4be07d_y.jpg) ### Snug Harbor Resort 10/10 Excellent "Everything was absolutely perfect and peaceful and very scenic thoroughly enjoyed our stay" [](https://expedia.ca/Friday-Harbor-Hotels-Snug-Harbor-Resort.h34844071.Hotel-Information) ![Trumpeter Inn](//images.trvl-media.com/lodging/35000000/34910000/34909100/34909004/6ed42192_y.jpg) ### Trumpeter Inn 10/10 Excellent "Amazing stay. Would highly recommend." [](https://expedia.ca/Friday-Harbor-Hotels-Trumpeter-Inn.h34909004.Hotel-Information) ![Bird Rock Hotel](//images.trvl-media.com/lodging/1000000/920000/913700/913611/2aa3eb52_y.jpg) ### Bird Rock Hotel 10/10 Excellent "The electronic check-in went smoothly and the location was great. Room was comfortable and the area was quiet. " [](https://expedia.ca/Friday-Harbor-Hotels-Bird-Rock-Hotel.h913611.Hotel-Information) ![Earthbox Inn & Spa](//images.trvl-media.com/lodging/2000000/1060000/1050900/1050864/57b4454b_y.jpg) ### Earthbox Inn & Spa 10/10 Excellent "Close to downtown area and easily walkable from the ferry without the need for a car. " [](https://expedia.ca/Friday-Harbor-Hotels-Earthbox-Inn-Spa.h1050864.Hotel-Information) ![Roche Harbor Resort](//images.trvl-media.com/lodging/17000000/16610000/16604300/16604230/3611a787_y.jpg) ### Roche Harbor Resort 10/10 Excellent "We loved our stay. Adorable location. " [](https://expedia.ca/Friday-Harbor-Hotels-Roche-Harbor-Resort.h16604230.Hotel-Information) ![Friday Harbor House](//images.trvl-media.com/lodging/11000000/10490000/10488900/10488823/739bad7d_y.jpg) ### Friday Harbor House 10/10 Excellent "I think we booked a high end room as it was pricy but had a jetted tub, and fireplace in the room. The location was great as we could walk everywhere except the National Park. " [](https://expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-House.h10488823.Hotel-Information) ![The Orca Inn](//images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/d74d1a58_y.jpg) ### The Orca Inn 10/10 Excellent "The rooms are very small just a bit bigger than a train sleeper. The staff were wonderful. Rooms are clean ." 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