Title: Hotels by Independent in San Juan Island from CA $130 | Expedia.ca [San Juan Island Travel Guide](https://expedia.ca/San-Juan-Island.dx6054490)[Hotels in San Juan Island](https://expedia.ca/San-Juan-Island-Hotels.d6054490.Travel-Guide-Hotels)[Vacation Rentals in San Juan Island](https://expedia.ca/San-Juan-Island-Vacation-Rentals.d6054490.Travel-Guide-VacationRentals)[Flights to San Juan Island](https://expedia.ca/Cheap-Flights-To-San-Juan-Island.d6054490.Travel-Guide-Flights)[Things to do in San Juan Island](https://expedia.ca/Things-To-Do-In-San-Juan-Island.d6054490.Travel-Guide-Activities)[San Juan Island Car Rentals](https://expedia.ca/Car-Rentals-In-San-Juan-Island.d6054490.Car-Rental-Guide)[San Juan Island Vacation Packages](https://expedia.ca/San-Juan-Island.d6054490.Destination-Travel-Guides) ![San Juan Island which includes a bridge, general coastal views and a coastal town](https://a.travel-assets.com/findyours-php/viewfinder/images/res70/47000/47908-San-Juan-Islands.jpg?impolicy=fcrop&w=1200&h=500&q=medium) # Find Hotels by Independent in San Juan Island from CA $130 ![calendar shield illustration](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__calendar_shield.svg) ### Change your mind Book hotels with free cancellation ![deals illustration](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__deals.svg) ### Treat yourself Sign in to save 10% or more on thousands of hotels [Sign in](https://www.expedia.ca/login) ![bed illustration](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__bed.svg) ### Be picky Search almost a million properties worldwide ## Check prices for these dates Tonight [Sep 27 - Sep 28](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-09-27&endDate=2025-09-28&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) Tomorrow [Sep 28 - Sep 29](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-09-28&endDate=2025-09-29&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) Next weekend [Oct 3 - Oct 5](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-10-03&endDate=2025-10-05&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) In two weeks [Oct 10 - Oct 12](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-10-10&endDate=2025-10-12&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) ## Top San Juan Island Independent Hotels ![Superior Double Room](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/b20aae51.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Property grounds](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/69b37946.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/dff58a22.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Terrace/patio](https://images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/25f6c831.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Anacortes Inn Anacortes 8.8/10 Excellent (383) "Friendly staff, cleanliness, our room amenities were nicely done, spacious, and comfortable" CA $180 CA $202 total includes taxes & fees Oct 1 - Oct 2 [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Inn.h8460818.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/90febc8a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/ac73321f.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fridge, microwave, coffee/tea maker](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/cb6ea832.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fridge, microwave, coffee/tea maker](https://images.trvl-media.com/lodging/1000000/10000/1600/1576/93cf26e7.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Coachman Inn & Suites Oak Harbor 9.0/10 Wonderful (1020) "Very nice property, well updated, friendly staff, great breakfast." CA $154 CA $171 total includes taxes & fees Oct 13 - Oct 14 [](https://www.expedia.ca/Oak-Harbor-Hotels-Coachman-Inn-Suites.h1576.Hotel-Information) ![Front of property](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/4322486e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/b805211e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Courtyard](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/a1fca5a6.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Cafe](https://images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/ce853ab0.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Friday Harbor Suites Friday Harbor 8.4/10 Very good (1002) "Great place to stay. " CA $265 CA $294 total includes taxes & fees Oct 23 - Oct 24 [](https://www.expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/bb3f2332.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Free daily continental breakfast](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/cf061f8b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Staircase](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/1e1b4076.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Cabin, Kitchenette](https://images.trvl-media.com/lodging/2000000/1670000/1668500/1668426/bba623b5.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Auld Holland Inn Oak Harbor 8.2/10 Very good (1018) "Really enjoy this property and the cute little cabins. " CA $136 CA $151 total includes taxes & fees Oct 1 - Oct 2 [](https://www.expedia.ca/Oak-Harbor-Hotels-Auld-Holland-Inn.h1668426.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/c6e1743f.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Standard Room, 1 King Bed, Fireplace](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/78608a93.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/785ac2f2.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Suite | Living area](https://images.trvl-media.com/lodging/2000000/1320000/1311600/1311525/9be408ea.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Anacortes Ship Harbor Inn Anacortes 9.0/10 Wonderful (1020) "Beautiful views and a great place to stay!" CA $130 CA $144 total includes taxes & fees Oct 5 - Oct 6 [](https://www.expedia.ca/Mount-Vernon-Hotels-Anacortes-Ship-Harbor-Inn.h1311525.Hotel-Information) ![Standard Room, 2 Queen Beds](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/e3c0d7e6.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Standard Room, 2 Queen Beds](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/fea7a302.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fitness facility](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/c750794e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/45229b5b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### The Marina Inn Anacortes 9.4/10 Exceptional (1022) "Nice clean place, comfortable bed, nice breakfast and great service." CA $174 CA $196 total includes taxes & fees Sep 29 - Sep 30 [](https://www.expedia.ca/Mount-Vernon-Hotels-The-Marina-Inn.h13137122.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/d74d1a58.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Terrace/patio](https://images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/b540d356.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Double Room, 2 Queen Beds](https://images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/ee11a630.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Reception](https://images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/9acfff4b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### The Orca Inn Friday Harbor 7.8/10 Good (1017) "Great stay" CA $143 CA $159 total includes taxes & fees Oct 28 - Oct 29 [](https://www.expedia.ca/Friday-Harbor-Hotels-The-Orca-Inn.h5784280.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/26f01d23.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Jetted tub](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/a1cc7753.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fridge, microwave, coffee/tea maker](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/9b0a00d8.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![42-inch flat-screen TV with cable channels, TV](https://images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/98bb202c.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Anaco Bay Inn Anacortes 8.0/10 Very good (1009) "Reasonable rates, convenient." CA $124 CA $137 total includes taxes & fees Sep 29 - Sep 30 [](https://www.expedia.ca/Mount-Vernon-Hotels-Anaco-Bay-Inn.h5765350.Hotel-Information) ![Family Suite, 2 Bedrooms, Non Smoking](https://images.trvl-media.com/lodging/5000000/4480000/4472800/4472744/1b8acfe3.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/5000000/4480000/4472800/4472744/36d2f7b6.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Family Suite, 2 Bedrooms, Non Smoking](https://images.trvl-media.com/lodging/5000000/4480000/4472800/4472744/6269107f.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Family Suite, 2 Bedrooms, Non Smoking | Private kitchen](https://images.trvl-media.com/lodging/5000000/4480000/4472800/4472744/2432b1f3.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Acorn Motor Inn Oak Harbor 8.0/10 Very good (631) "Close to downtown, restaurants and parks." CA $117 CA $130 total includes taxes & fees Oct 1 - Oct 2 [](https://www.expedia.ca/Oak-Harbor-Hotels-Acorn-Motor-Inn.h4472744.Hotel-Information) ![King Villa | Private kitchen](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/e0287958.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lounge](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/dc823c93.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/4275dea4.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![King Villa | Private kitchen](https://images.trvl-media.com/lodging/8000000/7760000/7758600/7758596/fe21282b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Sunrise Inn Villas and Suites Anacortes 8.6/10 Excellent (662) "Its a nice place with a fine room." CA $165 CA $199 total includes taxes & fees Sep 29 - Sep 30 [](https://www.expedia.ca/Mount-Vernon-Hotels-Sunrise-Inn-Villas-And-Suites.h7758596.Hotel-Information) Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply. [View all properties](https://expedia.ca/Hotel-Search?startDate=2025-10-11&endDate=2025-10-12®ionId=6054490&adults=2&sort=RECOMMENDED&openPlayBack=true) ![](https://a.travel-assets.com/pricing-claim/sparkle_dark.svg) Save an average of 15% on thousands of hotels when you're signed in [Sign in](https://expedia.ca/user/signin?ckoflag=0&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Island-Hotels-Independent.0-0-d6054490--bIndependent.Travel-Guide-Filter-Hotels)[Sign up, it's free](https://expedia.ca/signup?enable_registration=true&+=&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Island-Hotels-Independent.0-0-d6054490--bIndependent.Travel-Guide-Filter-Hotels) ## Top San Juan Island Hotel Reviews ![The Marina Inn](//images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/e3c0d7e6_y.jpg) ### The Marina Inn 10/10 Excellent " ." [](https://expedia.ca/Mount-Vernon-Hotels-The-Marina-Inn.h13137122.Hotel-Information) ![Coachman Inn & Suites](//images.trvl-media.com/lodging/1000000/10000/1600/1576/90febc8a_y.jpg) ### Coachman Inn & Suites 10/10 Excellent "Nice place. Clean and well maintained. Good value and good breakfast bar. " [](https://expedia.ca/Oak-Harbor-Hotels-Coachman-Inn-Suites.h1576.Hotel-Information) ![The Orca Inn](//images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/d74d1a58_y.jpg) ### The Orca Inn 10/10 Excellent "I did not expect much for the price we paid but this little gem met all our needs. The front desk woman CJ was super helpful when we added a night to our stay. Will def stay here again. But if you plan to stay in your room for other than a shower and sleep, this may not the place for you." [](https://expedia.ca/Friday-Harbor-Hotels-The-Orca-Inn.h5784280.Hotel-Information) ![Earthbox Inn & Spa](//images.trvl-media.com/lodging/2000000/1060000/1050900/1050864/57b4454b_y.jpg) ### Earthbox Inn & Spa 10/10 Excellent "The hotel was in a very convenient location. Perfect for your fur babies to take on a walk. The room was clean and well equipped to host our 1 year old and 2 dogs. We had a lovely time. The hotel manager had excellent suggestions to explore on the island. Will definitely will stay with them next time." [](https://expedia.ca/Friday-Harbor-Hotels-Earthbox-Inn-Spa.h1050864.Hotel-Information) ![Friday Harbor Suites](//images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/4322486e_y.jpg) ### Friday Harbor Suites 10/10 Excellent "Excellent experience!" [](https://expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) ![Snug Harbor Resort](//images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/5b4be07d_y.jpg) ### Snug Harbor Resort 10/10 Excellent "Everything was absolutely perfect and peaceful and very scenic thoroughly enjoyed our stay" [](https://expedia.ca/Friday-Harbor-Hotels-Snug-Harbor-Resort.h34844071.Hotel-Information) ![Trumpeter Inn](//images.trvl-media.com/lodging/35000000/34910000/34909100/34909004/6ed42192_y.jpg) ### Trumpeter Inn 10/10 Excellent "Amazing stay. Would highly recommend." [](https://expedia.ca/Friday-Harbor-Hotels-Trumpeter-Inn.h34909004.Hotel-Information) ![Bird Rock Hotel](//images.trvl-media.com/lodging/1000000/920000/913700/913611/2aa3eb52_y.jpg) ### Bird Rock Hotel 10/10 Excellent "The electronic check-in went smoothly and the location was great. Room was comfortable and the area was quiet. " [](https://expedia.ca/Friday-Harbor-Hotels-Bird-Rock-Hotel.h913611.Hotel-Information) ![Roche Harbor Resort](//images.trvl-media.com/lodging/17000000/16610000/16604300/16604230/3611a787_y.jpg) ### Roche Harbor Resort 10/10 Excellent "We loved our stay. Adorable location. 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