Find hotels in Marathon, FL from CA $97

    Plan, book, stay with confidence
    bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    today icon
    Change your mind
    Book hotels with free cancellation

Check Marathon hotel prices

Tomorrow night
This weekend
Next weekend

Filter by

Popular filters
Popular filters
Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Area
Area
Popular locations
Popular locations
Meal plans available
Meal plans available
Amenities
Amenities
Accessibility
Accessibility
Traveller experience
Traveller experience

Top 10 Marathon hotels and places to stay

Beach nearby
Life in Paradise w/ Boat Slip at #1 Rated Resort in Marathon - Coral Lagoon
10.0 out of 10, Exceptional, (189)
"This was a great vacation for my daughter's 18 birthday with some friends and family. We saw manatees the first morning out back in the canal. There was always some type of animal in the very sheltered canal if you have a boat. We brought our pontoon boat and had a day of very bad weather. We never worried once because we could see the boat from the back porch (50 yards away) and the canal is very sheltered and nice. You have access to the ocean and the bay side as soon as you go around the...
Life in Paradise w/ Boat Slip at #1 Rated Resort in Marathon - Coral Lagoon
A heated pool
Beautiful Coral Lagoon #12 - Waterfront - Boat Slip & Heated Pool
10.0 out of 10, Exceptional, (122)
"This condo was perfect for our family and our boat! Well decorated and furnished and a great bunk room for the kids! So convenient to have the boat just feet from the back door and the heated pool was a perfect way to end the day! Convenient to everything in marathon but in a quiet community where we could relax. Easy access to the gulf and the Atlantic. We will definitely stay here again when we come back down"
Beautiful Coral Lagoon #12 - Waterfront - Boat Slip & Heated Pool
View from property
Villa 5034 on Duck Key Boat Slip available
10.0 out of 10, Exceptional, (1)
"The Villa was perfect for our vacation. Beautiful sunsets every night. Frank was very responsive to our questions. Would stay again"
The price is CA $327
CA $803 total
includes taxes & fees
May 14 - May 15
Villa 5034 on Duck Key Boat Slip available
Save an average of 15% on thousands of hotels when you're signed in
Standard Bungalow | Living area
Yacht Haven Marina
3.5 star property
9.8 out of 10, Exceptional, (44)
"The staff are the absolute best!"
The price is CA $218
CA $417 total
includes taxes & fees
May 14 - May 15
Yacht Haven Marina
Outdoor pool
Palm Villa May dates available
9.8 out of 10, Exceptional, (123)
"The owners are 5 star! The villa is conveniently located to the main Hawks Cay lodge as well as the Angler & Ale Restaurant and docks. The unit is clean, comfortable and accommodates 4 adults with everything you need for a relaxing, fun filled getaway. If you plan ahead, like we always do when coming to the Keys, I suggest you stop at Publix and stock up on any food, drinks and extras (shampoo, laundry detergent, dishwasher tabs, etc) that you may want while on property as it’s about a 25 min...
Palm Villa May dates available
Beach
Key Lime Cottage: A Stunning Duck Key Retreat with Private Dip Pool and Scenic Water Views!
9.8 out of 10, Exceptional, (42)
"Love Duck Key!"
Key Lime Cottage: A Stunning Duck Key Retreat with Private Dip Pool and Scenic Water Views!
Pool
2-BEDROOM 3 BATH 299nt + Pool on BLUE LAGOON. SLEEPS 6
9.6 out of 10, Exceptional, (32)
"Great property, excellent location, very well maintained. Enjoyed our stay, Marc was very easy to work with, excellent communication and very responsive. My only criticism is the bathrooms are a bit small, but everything else was perfect."
2-BEDROOM 3 BATH 299nt + Pool on BLUE LAGOON. SLEEPS 6
Exterior
4 Bed 3 Bath Duck Key Sanctuary Villa W/ Private Pool & 35 Foot Dock - Sleeps 10
9.6 out of 10, Exceptional, (118)
"Beautiful property to enjoy a family Christmas. We had 9 people staying and everyone was comfortable with open layout and cozy furniture. Property was easy to find and the check in / out process was easy. The host was responsive to any questions. We’ve done a lot of VRBOs in a variety of locations, and this was by far the best stocked and most welcoming properties."
The price is CA $1,092
CA $2,034 total
includes taxes & fees
May 14 - May 15
4 Bed 3 Bath Duck Key Sanctuary Villa W/ Private Pool & 35 Foot Dock - Sleeps 10
Living area
Villa 5020 on Duck Key BOAT SLIP available
9.6 out of 10, Exceptional, (7)
"Unit was very clean and had everything we needed"
The price is CA $327
CA $803 total
includes taxes & fees
May 14 - May 15
Villa 5020 on Duck Key BOAT SLIP available
Exterior
Grassy Flats Resort & Beach Club
2.5 star property
9.4 out of 10, Exceptional, (159)
"Stunning property. Relaxing and quaint. "
The price is CA $543
CA $611 total
includes taxes & fees
May 21 - May 22
Grassy Flats Resort & Beach Club
Exterior
Waterfront Duck Key Villa
9.4 out of 10, Exceptional, (55)
"We loved our stay. It was so clean and absolutely stunning. Would absolutely stay there again next trip!"
The price is CA $682
CA $1,385 total
includes taxes & fees
May 14 - May 15
Waterfront Duck Key Villa
Living area
Waterfront Duck Key Villa - Sleeps 6
9.4 out of 10, Exceptional, (30)
"We really enjoyed our stay! Lovely home with lots of space and perfect location."
Waterfront Duck Key Villa - Sleeps 6
Beach towels
Villa 5087 on Duck Key BOAT SLIP available
9.4 out of 10, Exceptional, (13)
"The place was very clean and very comfortable. The location was great and we had a wonderful stay. The kitchen had all the utensils needed to cook a meal or two."
The price is CA $354
CA $837 total
includes taxes & fees
May 14 - May 15
Villa 5087 on Duck Key BOAT SLIP available
Outdoor pool, sun loungers
Knight's Key Suites
3.0 star property
9.0 out of 10, Wonderful, (1025)
"The room was very clean and you are across a restaurant so don’t need to drive anywhere unless you want to."
The price is CA $171
CA $222 total
includes taxes & fees
May 15 - May 16
Knight's Key Suites
Property grounds
Tropical Paradise in Marathon Key-minutes from Sombrero beach!
9.0 out of 10, Wonderful, (11)
"We enjoyed our stay in Marathon. We were very comfortable in these accommodations which are well appointed with a lovely beachy theme. The kitched is a bit small but doable for two. Otherwise, the amenities of its location is great!"
Tropical Paradise in Marathon Key-minutes from Sombrero beach!
Fridge, microwave, oven, stovetop
Waterfront retreat with balcony views, kayak, SUP, central AC & washer/dryer
9.0 out of 10, Wonderful, (35)
"This area is great and the homes are nice with ample room and all the things you need. The good parts are the views are amazing, kitchen is nicely stocked, beds are comfy, no bugs, nice pillows and nice decor. If your looking for just a nice house to stay at this is a great spot. There were only a few minor issues with the space, the dish washer did not work, after 3 days of trying I somehow got it to run once. I had seen this issue on previous reviews so it gave me some concern that this was...
Waterfront retreat with balcony views, kayak, SUP, central AC & washer/dryer
Fishing
Fairfield Inn & Suites by Marriott Marathon Florida Keys
2.5 star property
8.8 out of 10, Excellent, (1003)
"Stayed here before, great place, great staff, and love the restaurant in back."
The price is CA $258
CA $291 total
includes taxes & fees
May 27 - May 28
Fairfield Inn & Suites by Marriott Marathon Florida Keys
2 outdoor pools, pool umbrellas, sun loungers
Glunz Ocean Beach Hotel & Resort
3.0 star property
8.8 out of 10, Excellent, (1000)
"ABSOLUTELY GORGEOUS "
The price is CA $272
CA $365 total
includes taxes & fees
May 14 - May 15
Glunz Ocean Beach Hotel & Resort
Aerial view
Top-floor, waterfront condo with canal views, pool, gym, on-site restaurant
8.8 out of 10, Excellent, (5)
"Our balcony overlooked the pool bar that had live entertainment each evening. Very enjoyable."
Top-floor, waterfront condo with canal views, pool, gym, on-site restaurant
A heated pool
Duck Key waterfront villa with private pool, kayak, SUP, washer/dryer & AC
8.8 out of 10, Excellent, (204)
"My wife and our friends wanted to come down and explore the Keys. So many other Vrbo options were so expensive but luckily we found this listing on Duck Key. It is basically in the middle of the Keys section off the highway and it provided such an easy way of exploring the various Keys without feeling like we were in the car the whole time. We loved unwinding in the personal pool on the patio after a nice day of exploring along with having some of the most beautiful sunrises and sunsets that we...
Duck Key waterfront villa with private pool, kayak, SUP, washer/dryer & AC
Don't see what you're looking for?
See all available properties in Marathon
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

What's the best place to stay in Marathon?

Courtyard by Marriott Faro Blanco Resort is a favorite with Expedia customers. This hotel offers 2 outdoor pools and 2 bars. Reviews from our site also recommend Seascape Resort & Marina and Bonefish Bay Motel as top options for your visit. See all available top hotels, or vacation rentals in Marathon.

What are some of the best vacation home rentals that Marathon has to offer?

Aqua Lodge Rentals At Coconut Cay: Visitors give good reviews to this Marathon vacation home rental, which is located near the beach and offers an outdoor pool, air-conditioning, and daily housekeeping to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a full-sized fridge, a stovetop, and a microwave. Some other homes for rent in Marathon include "Your own private resort" - Mockingbird Pointe - Waterfront, pool and dockage and Waterfront villa with 5 kayaks, covered deck, washer/dryer, & AC. See all vacation rentals in Marathon.

If I need to cancel my hotel reservation in Marathon, will I receive a refund?

Yes, most hotel room reservations are fully refundable as long as you cancel prior to the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of check in. If you have a non-refundable reservation, it might still be possible to cancel it and get a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in Marathon.

Where can I learn more about changing or cancelling my trip to Marathon?

For more details about picking new dates or cancelling your trip to Marathon, click here.

What's the best place to stay on a budget in Marathon?

Based on reviews, Faro Blanco Resort & Yacht Club is a popular hotel for our travelers who want a more economical choice, and features free WiFi and 2 outdoor pools. Other good choices to stay on the cheap include Kingsail Resort and Floating Sea Cove Resort & Marina. View all budget hotels in Marathon.

What's the best place to stay for a family vacation in Marathon?

Faro Blanco Resort & Yacht Club is a hotel with 2 outdoor pools and 2 restaurants, and it's a top choice on Expedia for families. Other good choices to stay with the kids include Hawks Cay Resort and Rainbow Bend Resort. Kids of all ages will also enjoy a visit to Crane Point Museum and Nature Center. Find more child-friendly accommodations in Marathon.

What's the best place to stay for a couple going to Marathon?

Faro Blanco Resort & Yacht Club is a favorite hotel for couples, and features premium bedding and 2 restaurants. Other good choices for a stay with your sweetheart include Isla Bella Beach Resort & Spa and Hawks Cay Resort. See all romantic hotels in Marathon.

What is the top LGBTQ-friendly accommodation in Marathon?

Hawks Cay Resort is a top LGBTQ-friendly hotel that features a marina and 5 outdoor pools. Fairfield Inn & Suites by Marriott Marathon Florida Keys and Hampton Inn Marathon - Florida Keys are other good options for your vacation. See all available hotels listed as LGBTQ-friendly in Marathon.

What's the best pet-friendly accommodation in Marathon?

Faro Blanco Resort & Yacht Club is a top dog-friendly hotel, and offers 2 restaurants and 2 outdoor pools for its human guests. Two other good options for you and your pet include Coconut Cay Resort & Marina and Kingsail Resort. See more pet-friendly hotel accommodations in Marathon.

Where is the best hotel to stay close to Sombrero Beach?

Faro Blanco Resort & Yacht Club is one of the top choices for your stay based on our traveler data, and this 4-star hotel offers a marina and 2 outdoor pools. It's located 1.8 mi (2.8 km) from Sombrero Beach. Another good option is Banana Bay Resort & Marina, located 1.6 mi (2.5 km) away.

What about the best place to stay near Seven Mile Bridge?

One of the top choices for your stay is Faro Blanco Resort & Yacht Club, located 3.2 mi (5.2 km) from Seven Mile Bridge, and this 4-star hotel offers a marina and 2 outdoor pools. Isla Bella Beach Resort & Spa and Captain Pip's at Knight's Key Inn are two other good options within a few miles.

What's the best place for a beach vacation in Marathon?

Isla Bella Beach Resort & Spa is a top beachfront hotel with 5 outdoor pools and a full-service spa, and it's located close to Sombrero Beach. Other good choices to stay near the beach include Hawks Cay Resort and Tranquility Bay Beachfront Hotel and Resort. See more stays near the beach in Marathon.

What's the best high-end place to stay in Marathon?

Isla Bella Beach Resort & Spa is a luxury hotel with 2 bars and a full-service spa, and it's a popular choice for Expedia travelers looking for an elegant place to stay. Find more luxury hotels in Marathon.

What's the best place to stay if I'm looking to play golf in Marathon?

Banana Bay Resort & Marina is a top hotel that has an adjacent golf course and features a marina. You can tee off at Florida Keys Country Club during your trip. See more golf hotels in Marathon.

What should I expect to pay for a resort fee in Marathon?

From the 1443 hotels and other properties in Marathon, there are about 6 that charge a resort fee. The resort fee averages USD 33.77 per night, per accommodation.

What are some accommodations with pools in Marathon?

Faro Blanco Resort & Yacht Club is a top hotel with 2 outdoor pools, 2 restaurants, and 2 bars. A couple of other options with an onsite pool include Isla Bella Beach Resort & Spa and Hawks Cay Resort. View all hotels with pools in Marathon.

What is the best spa hotel in Marathon?

Isla Bella Beach Resort & Spa is a top beach spa hotel featuring 5 pools, a fitness center, a hair salon, and a restaurant. Treat yourself to a facial, body scrub, or Swedish massage at The Spa at Isla Bella. Other popular spa hotels in Marathon include Hawks Cay Resort and Villas At Hawks Cay Resort. See all spa hotels in Marathon.

What's the most popular hotel in Marathon with a water park on-site or close by?

A) Private Luxury Single Family Home Reduced Rates - Resort Style Pool & Dock is a popular vacation home featuring in-room kitchens and a barbecue grill.

What's the best place to stay near Miami International Airport (MIA)?

Miami International Airport Hotel is a popular 3-star hotel featuring a restaurant and free WiFi. It's located a short 0.1 mi (0.1 km) from Miami Intl. Airport. Other accommodations within close proximity to the airport include Ramada by Wyndham Miami Springs/Miami International Airport and Comfort Suites Miami Airport North.

What's it like staying in Marathon?

Travelers to Marathon give high marks for the seafood restaurants and beaches. In Marathon, there are 1443 hotels and other accommodations to choose from. Find out more about Marathon.

What is there to see in Marathon?

Landmarks like Seven Mile Bridge and San Pablo Catholic Church might be worth a visit. The beaches and sunsets highlight the natural beauty with places to discover including Sombrero Beach, Vaca Key, and Coco Plum Beach. Fishing is just one of the top activities, while Florida Keys Country Club and Captain Hooks Marina and Dive Center are sights to visit. Check out what more to see and do in Expedia's Marathon guide.

What's the weather like in Marathon?

The hottest months are usually August and July with an average temp of 84°F, while the coldest months are January and February with an average of 72°F. Average annual precipitation for Marathon is 36 inches.