Book The Best Hotels in Brookhaven, NY for 2026 from CA $199 - Fully Refundable Options

Our top choices for Brookhaven hotels

Midway Motel

Patchogue

Anthony

CA $254 total

includes taxes & fees

Jun 9 - Jun 10

Hilton Garden Inn Stony Brook

Stony Brook

Constance

CA $248 total

includes taxes & fees

Jul 1 - Jul 2

Shorewood Inn

Riverhead

Atsuko

CA $221 total

includes taxes & fees

Jun 7 - Jun 8

Holiday Inn Express Stony Brook by IHG

Centereach

Belinda

CA $228 total

includes taxes & fees

Jul 1 - Jul 2

Clarion Hotel & Conference Center Ronkonkoma MacArthur Airport

Ronkonkoma

Steven

CA $164 total

includes taxes & fees

Jun 7 - Jun 8

Holiday Inn Long Island-Islip Arpt East by IHG

Holtsville

Chelsea

CA $229 total

includes taxes & fees

Jun 30 - Jul 1

Indoor pool, seasonal outdoor pool, pool umbrellas, sun loungers

Hyatt Regency Long Island

Hauppauge

Tatiana

CA $298 total

includes taxes & fees

Jun 8 - Jun 9

Indoor pool, open 5:30 AM to 11:00 PM, sun loungers

Hampton Inn Long Island-Brookhaven

Farmingville

Anthony John

CA $236 total

includes taxes & fees

Jul 2 - Jul 3

Spacious 3BR Family Home Near Everything

Central Islip

CA $338 total

includes taxes & fees

Jun 25 - Jun 26

La Quinta Inn & Suites by Wyndham Islip - MacArthur Airport

Bohemia

Colin

CA $181 total

includes taxes & fees

Jul 5 - Jul 6

Comfort Inn Medford - Long Island

Medford

Patricia

CA $237 total

includes taxes & fees

Jun 7 - Jun 8

Hilton Garden Inn Islip/MacArthur Airport

Ronkonkoma

Sally

CA $229 total

includes taxes & fees

Jun 29 - Jun 30

Residence Inn by Marriott Long Island Holtsville

Holtsville

Nicole

CA $269 total

includes taxes & fees

Jul 6 - Jul 7

Home2 Suites by Hilton Long Island Brookhaven

Yaphank

Keri

CA $277 total

includes taxes & fees

Jul 6 - Jul 7

Rodeway Inn Macarthur Airport

Ronkonkoma

Anthony

CA $161 total

includes taxes & fees

Jul 7 - Jul 8

Budget Host East End

Riverhead

Barbara

CA $199 total

includes taxes & fees

Jul 5 - Jul 6

Holiday Inn Express Hauppauge-Long Island

Hauppauge

Ken

CA $237 total

includes taxes & fees

Jul 7 - Jul 8

Fairfield Inn by Marriott Medford Long Island

Medford

Dumanese

CA $228 total

includes taxes & fees

Jun 30 - Jul 1

Sauna, steam room, body treatments, hydrotherapy, aromatherapy

The Inn And Spa At East Wind

Calverton

Rachel

CA $276 total

includes taxes & fees

Jun 14 - Jun 15

Hampton Inn Long Island/Islandia

Islandia

Jennifer

CA $253 total

includes taxes & fees

Jul 6 - Jul 7

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Stay near popular Brookhaven attractions

beach near Bellport Bay State Tidal Wetland

Why not spend a lazy afternoon at beach near Bellport Bay State Tidal Wetland during your trip to Brookhaven? Experience the area's festivals and entertainment venues.

See properties

Learn more about Brookhaven

Explore the scenic trails of Wertheim National Wildlife Refuge where migratory birds create a paradise for photographers and nature lovers. Families flock to Smith Point Beach for summer swimming, while history buffs can discover Long Island's past at the Longwood Estate's historic grounds.

See all hotels in Brookhaven

Setauket Harbor, Long Island Sound, New York

Top Brookhaven Hotel Reviews

Clarion Hotel & Conference Center Ronkonkoma MacArthur Airport

10/10 Excellent

"It was a little outdated, but it did the job"

Grove Hotel

10/10 Excellent

"Perfect place for an affordable stay with my dog. Betting it’s noisy weekends but I was there early season on weekdays, and asked for a quiet room and it was! A/C was great. Most important it was super clean. Sheets and towels were really nice all cotton which matters to me. Bed was ok. Firm enough. Coffee machine in the room. I loathed the scent of the soap and shampoo— but I usually do so bought my own. It’s a very short walk from the ferry, to restaurants, grocery store, shops and one block from the beach. They had nice beach towels. Above all the staff and cleaners wete warm and welcoming at a time when kindness mattered a lot."

Radisson Hotel Hauppauge-Long Island

4/10 Poor

"This place is terrible No napkins, No Tissue in the room. Room is cold heat does not work and no hot water . Wanted to heat my food in the lobby microwave . Which makes no sense put microwaves in room and it was beyond filthy iam surprised it did not smell . I would not know anyway because sense COViD I don’t smell or taste things well. Then I went to ask to have it cleaned and the poor guy I spoke to could not find the house keeper to clean it . Gut was walking back and looking for what I guess was the housekeeper and could find him/her . Then the people that I believed worked there didn’t care to ask me if I needed help or even try to accommodate my needs . One even asked me something that I had nothing to do with. Terrible Terrible Terrible. I will no longer book a stay here I rather pay the extra money to stay somewhere elsewhere. Whoever owns this hotel needs to redo the whole place. They should just show up with warnings to see what Iam talking about . I come here to New York to see my mother suffering from Dementia and I would like to spend my time at a place that is comfortable after seeing my mother in her state. It sad to come back to this room and can’t even enjoy my food because it is cold because I don’t want use the beyond filthy microwave."

More cheap stays in Brookhaven

Budget Host East End

30 Lake Avenue Riverhead NY

CA $174

CA $199 total

Jul 5 - Jul 6

includes taxes & fees

6.8/10 (820 reviews)

Hotels in Brookhaven with star rating

Frequently asked questions

When is the best time to go to Brookhaven?

The best time to go to Brookhaven is during the spring and autumn months for pleasant weather and fewer crowds.

Spring, particularly from April to May, offers mild temperatures, blooming gardens, and the start of outdoor activities without the peak season rush. You'll find it comfortable for exploring the local parks and coastal areas.

Autumn, from September to October, brings cooler temperatures and beautiful fall foliage, especially in the more wooded parts of the area. It's an excellent time for scenic drives and enjoying the local harvest festivals.

Can I cancel my hotel reservation on Expedia?

You can cancel your hotel reservation on Expedia, though it depends on the cancellation policy of your booking. Most bookings are refundable if canceled within 24-48 hours of the scheduled arrival. Be sure to check your booking confirmation for the exact cancellation policy. If free cancellation is available, you can cancel directly through your Expedia account by logging in, going to "My Trips", and selecting your reservation. To find flexible deals, filter your search by "Fully refundable property" for hotels in Brookhaven.

How can I save on a Brookhaven hotel booking with Expedia?

Members always get our best prices. Find our best Brookhaven hotel deals by joining Expedia's free travel rewards program today. As a member, you can unlock instant savings and member perks when you're logged in to your account. Another tip is to book your hotel and flights together on Expedia, where bundling can result in significant savings.

How much is the nightly rate at a Brookhaven hotel?

Prices for hotels in Brookhaven often vary, but you can find a great deal from CA $199 on Expedia. All sorts of factors affect price, such as the time of year or the days of the week you choose for your stay. Find the best deals by being flexible with your dates, and sort search results by "Price: low to high" for the cheapest rate.

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Our top choices for Brookhaven hotels

Midway Motel

Hilton Garden Inn Stony Brook

Shorewood Inn

Holiday Inn Express Stony Brook by IHG

Clarion Hotel & Conference Center Ronkonkoma MacArthur Airport

Holiday Inn Long Island-Islip Arpt East by IHG

Hyatt Regency Long Island

Hampton Inn Long Island-Brookhaven

Spacious 3BR Family Home Near Everything

La Quinta Inn & Suites by Wyndham Islip - MacArthur Airport

Comfort Inn Medford - Long Island

Hilton Garden Inn Islip/MacArthur Airport

Residence Inn by Marriott Long Island Holtsville

Home2 Suites by Hilton Long Island Brookhaven

Rodeway Inn Macarthur Airport

Budget Host East End

Holiday Inn Express Hauppauge-Long Island

Fairfield Inn by Marriott Medford Long Island

The Inn And Spa At East Wind

Hampton Inn Long Island/Islandia

Stay near popular Brookhaven attractions

beach near Bellport Bay State Tidal Wetland

Learn more about Brookhaven

Top Brookhaven Hotel Reviews

Clarion Hotel & Conference Center Ronkonkoma MacArthur Airport

More cheap stays in Brookhaven

Budget Host East End

Hotels in Brookhaven with star rating

Frequently asked questions

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