Book The Best Hotels in Ayios Thomas for 2026 from CA $79 - Fully Refundable Options

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Our top choices for Ayios Thomas hotels

A pool with a water feature, surrounded by chairs and trees.

A pool surrounded by lounge chairs and a building with multiple balconies.

A modern hotel room with a bed, a seating area, a TV mounted on the wall, and a view of the outdoors.

A pathway leading to a building with a mountainous backdrop.

1. Idi Hotel

Faistos

Erin

CA $106

CA $121 total

includes taxes & fees

Oct 12 - Oct 13

A modern bedroom with a large bed, a built-in sink, and a mirror.

A bar with wooden shelves stocked with various bottles, a bartender, and rustic decor.

A person sitting on a bean bag chair with a wooden table beside them, a cup, and a straw hat on the table.

A modern two-story house with a balcony, outdoor seating, and a hanging chair.

2. Manili Boutique Suites & Villas, an SLH Hotel

Archanes-Asterousia

Frederik

CA $135

CA $166 total

includes taxes & fees

Oct 15 - Oct 16

A stone building with a wooden door and a small archway. There is a tree with purple flowers in front of the building.

An aerial view of a coastal area with a beach, a road, and a row of buildings with a pool.

A rustic room with a wooden staircase, a bed with a patterned bedspread, a dining table, and a painting on the wall.

A rustic stone room with a wooden bed, a fireplace, and a wooden table with a plate.

3. Traditional Cretan Houses

Heraklion

Eric

CA $70

CA $80 total

includes taxes & fees

Oct 2 - Oct 3

A reception area with a sign for Gallery Suites, surrounded by tables and chairs, and a green wall with plants.

A stone building with a neon sign reading "démodé Café Bistro" and a wooden bench in the foreground.

An interior space with a sliding glass door leading to an outdoor area with a chair and a table.

A modern hotel room with a bed, a desk, a television, and a view of the outdoors.

4. Chapter 02 Gallery Suites

Heraklion

Kimberly

CA $110

CA $128 total

includes taxes & fees

Oct 31 - Nov 1

A hotel entrance with a clear sign reading "sofia hotel".

A spacious lobby with multiple seating areas, a fireplace, and a staircase leading to upper floors.

A hotel room with two beds, a small table with a basket of fruit, a chair, and a nightstand with a lamp.

A pool area with lounge chairs, a lifebuoy, and outdoor seating.

5. Sofia Hotel

Nea Alikarnassos

Roberson

CA $94

CA $115 total

includes taxes & fees

Oct 4 - Oct 5

A swimming pool with lounge chairs and umbrellas, surrounded by stone walls and a view of the landscape.

An outdoor dining area with tables and chairs arranged under a tree.

A dining area with tables set for a meal, a stone fireplace, and a mural on the wall.

An outdoor dining area with stone flooring and a view of the countryside.

6. Arolithos Traditional Cretan Village

Malevizi

Kevin

CA $67

CA $92 total

includes taxes & fees

Oct 30 - Oct 31

A modern living room with a grey sofa, a coffee table with decorative items, a black partition, and a view of a bedroom with a bed and a wardrobe.

A modern coffee shop with a brick wall, a counter with various coffee machines, and shelves stocked with beverages.

A modern living room with a grey sofa, a white coffee table, and a potted plant.

A modern bedroom with a large bed, a nightstand, a small table with a plant, and a balcony with a view of the city.

7. Stay 365 Heraklion Apart Hotel

Heraklion

Ioannis

CA $96

CA $113 total

includes taxes & fees

Oct 9 - Oct 10

A modern outdoor seating area with wicker furniture, large windows offering a city view, and a ceiling with recessed lighting.

A hotel room with a large bed, a desk with a computer, a TV, and a shower area.

A spacious indoor area with multiple tables and chairs, large windows offering views of the city, and a ceiling with exposed beams.

A hotel entrance with a reception desk, a glass door, and a sign reading 'MARVEL Deluxe Rooms'.

8. Marvel Deluxe Rooms

Nea Alikarnassos

Daniela

CA $78

CA $92 total

includes taxes & fees

Oct 30 - Oct 31

A balcony with a table and chairs, overlooking a coastal landscape with a clear view of the sea and distant hills.

A view through a window with a clear blue sky, a flag, and a pathway leading to a beach.

A swimming pool with clear water reflecting the sun.

A pathway flanked by palm trees and neatly trimmed hedges, leading to a building with flags.

9. Karteros Hotel

Hersonissos

Pantelis

CA $76

CA $95 total

includes taxes & fees

Oct 6 - Oct 7

A room with a bed, a chair, a balcony, and a window with curtains.

A multi-story hotel with balconies, a parking lot, and a view of the cityscape.

A restaurant with high ceilings, pendant lighting, and a central bar area. Tables are arranged for dining, and there are stools near the bar.

The exterior of the Asterion Hotel with a modern entrance, glass doors, and a reception area visible through the glass.

10. Asterion Hotel

Nea Alikarnassos

Antreas

CA $111

CA $135 total

includes taxes & fees

Oct 30 - Oct 31

A balcony with a table, chairs, and a potted plant.

A conference room with a long table, blue chairs, and a projection screen.

A restaurant with multiple tables set for dining, a kitchen area with food preparation visible, and large windows allowing natural light.

A hotel room with a large bed, a desk, a chair, and a balcony with a view of buildings.

11. Atrion Hotel

Heraklion

kevin

CA $105

CA $127 total

includes taxes & fees

Oct 28 - Oct 29

Two sun loungers with cushions and a hat on one, overlooking a beach with umbrellas and people.

A modern living room with a sofa, a dining table, and a TV.

A modern reception area with a wooden reception desk, a grey sofa, and a small round table. There are black pendant lights and a large painting on the wall.

A modern bathroom with a white sink, a toilet, and a glass-enclosed shower area.

12. Nuovo Crete By Sea - Adults Only

Malevizi

"Property is very quiet and in a location that is a five minute walk to the main strip of restaurants, cafes, bars etc The property is only 20 mins from the airport by taxi and is associated with a beach bar a couple of mins walk away that you go to for breakfast and use of the beach and pool. All the facilities are excellent and clean and fresh. Check in was easy and any questions we had were dealt with confidently by staff."

Ifeoma

CA $84

CA $104 total

includes taxes & fees

Oct 16 - Oct 17

A beachside restaurant with outdoor seating and umbrellas, overlooking the sea.

An outdoor cafe with wicker furniture, hanging lights, and a view of the parking lot.

A beachside lounge area with multiple sunbeds and thatched umbrellas.

A room with a view of the beach, featuring two sofas with patterned cushions, a wooden coffee table, and a large window with blue curtains.

13. Yianna Caravel Suites "by Checkin" adults only

Malevizi

Edan

CA $126

CA $159 total

includes taxes & fees

Oct 30 - Oct 31

A bedroom with a bed, two chairs, a small table with lemons and a glass, and a painting on the wall.

A modern room with a wooden floor, a round table with chairs, and potted plants.

A wooden table with a metal lantern and a glass ashtray on a balcony with a bamboo fence.

A modern living room with a sofa, a plant, and a dining area with chairs.

14. Artree Suites

Heraklion

ChunHui

CA $118

CA $138 total

includes taxes & fees

Oct 30 - Oct 31

A balcony with a view of the ocean, a table, and a chair.

A breakfast table with a variety of food items, including fruits, pastries, and a vase with flowers.

A spacious living area with a large brown sofa, a dining table with chairs, and a view of the ocean through large windows.

A coastal view with a historic fort, boats, and a clear sky.

15. Kronos Hotel

Heraklion

Tayfun

CA $110

CA $128 total

includes taxes & fees

Oct 31 - Nov 1

A modern hotel with a central swimming pool, multiple balconies, and outdoor seating areas.

A modern hotel lobby with a clean, tiled floor, large potted plants, and a reception desk in the center.

A buffet setup with various food items and a coffee machine.

An outdoor dining area with wicker chairs and tables, potted plants, and a modern building in the background.

16. Galaxy Hotel Iraklio

Heraklion

Andre

CA $171

CA $219 total

includes taxes & fees

Oct 27 - Oct 28

A restaurant with tables and chairs, large windows with a view of the sea and a distant cityscape.

A hotel room with a bed, a desk with a laptop, a chair, a TV on the wall, and a view of the sea through large windows.

A modern hotel lobby with a staircase, a reception desk, a dining area, and a large window with a view of palm trees.

A multi-story hotel with balconies, a neon sign, and a visible entrance.

17. Marin Hotel

Heraklion

ROBERT PETER

CA $97

CA $119 total

includes taxes & fees

Oct 22 - Oct 23

A modern hotel room with a bed, a desk with a chair, a large window with curtains, a wooden wardrobe, and a black basin on the counter.

A modern reception area with a marble wall, a reception desk, and seating arrangements.

A modern reception area with a reception desk, seating area, and potted plants.

A modern hotel with a two-story structure, large windows, and a visible restaurant area with outdoor seating.

18. Anesea City

Nea Alikarnassos

Lucille

CA $157

CA $195 total

includes taxes & fees

Oct 30 - Oct 31

A modern hotel lobby with a sofa, tables, and a reception desk.

A hallway leading to a bedroom with a bed, a bedside table, and a nightstand.

A modern interior with a marble staircase, a potted plant, a wooden bookshelf, and a closed door.

A modern lobby with a reception desk, a staircase, and a large potted plant.

19. Nesean Plaza Hotel

Heraklion

"Our stay at the Nesean Plaza was so nice. This stay was a part of our Honeymoon. We got a bottle of champagne and a plate with fresh fruit when we arrived! The staff was very kind. And most important, the room was so clean! We got clean towels everyday. Breakfast was a buffet and had enough optione to choose from. If we go to Crete (Heraklion) we would stay in this hotel again. Really recommend this hotel!"

Hong thu thi

CA $132

CA $167 total

includes taxes & fees

Oct 28 - Oct 29

A hotel with multiple balconies, a swimming pool, and a landscaped garden area.

A restaurant with a stone wall, wooden tables, and chairs.

A hotel room with a wooden ceiling, a bed, a desk, a chair, a sofa, and a dining table with fruits and glasses.

A hotel room with a large bed, a desk, a TV, and a balcony with a view of the mountains.

20. Petousis Hotel & Suites

Malevizi

Andrew

CA $105

CA $135 total

includes taxes & fees

Oct 31 - Nov 1

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Top Ayios Thomas Hotel Reviews

Aquila Atlantis Hotel

10/10 Excellent

"We only stayed for one night, but really enjoyed our stay. The hotel is in a great location, everything was very clean, and the staff were friendly and helpful. The rooftop pool was a nice bonus and a great place to relax. Would definitely stay here again."

Peninsula Resort & Spa - All Inclusive

8/10 Good

"Staff were great, everything was clean, food was great. I only have 2 complaints really, 1. Between meals the snack bar didnt have much to eat so if you missed a meal even by a small bit you were stuck til the next meal. 2. The entertainment wasnt great. It felt like the activity people had a budget of like 0 bucks and mostly just played music. Would be nice to have more to do at the resort."

Lato Boutique Hotel

10/10 Excellent

"Short stay did not get to use a lot of the facility"

Mirabello Hotel

10/10 Excellent

"Great location. Helpfull staff ⭐️⭐️⭐️⭐️⭐️"

GDM Megaron Historical Monument Hotel

8/10 Good

"A very nice hotel. The room was large with nice furnishings and amenities. The bed was very comfortable. Downsides were that our window looked directly across at a strip club, and there were no outlets or charging ports near the bedside tables."

Artion City Boutique Hotel

8/10 Good

"I choose this spot over others because they mentioned a complimentary shuttle to square/ heart of town which was not the case. I don’t mind walking but I only have so many footsteps a day due to double foot surgery. Other than that , everything was great. The staff, the food, & the property itself. Thank you."

Ethereal White Resort Hotel & Spa - Adults Only

8/10 Good

"Everything was great except for the shower. No walls, just a shower head in the corner of the bathroom. Water got everywhere, the floor became quite slippery."

Sofia Hotel

10/10 Excellent

"Rooms were clean. Has pool to use. Has parking for guests."

Galaxy Hotel Iraklio

10/10 Excellent

"Stayed one night and it was perfect!! Staff were helpful and only 15 min walk from the main areas which was great. We didn’t want to stay right in the hustle and bustle where it was loud. Breakfast was also really good. Had everything you wanted. If I go back to Heraklion I’d definitely stay there again. Parking included was a bonus."

More cheap stays in Ayios Thomas

Mirabello Hotel

20 Theotokopoulou St Heraklion Crete Island

CA $66

CA $79 total

Oct 23 - Oct 24

includes taxes & fees

8.6/10 Excellent! (413 reviews)

Pela Mare Hotel

Agia Pelagia Malevizi Crete Island

CA $76

CA $90 total

Oct 15 - Oct 16

includes taxes & fees

9.4/10 Exceptional! (254 reviews)

Thalia Bloom Villa Apartments

Marikas Kapsi Malevizi Heraklion

CA $93

CA $108 total

Oct 1 - Oct 2

includes taxes & fees

9.6/10 Exceptional! (31 reviews)

El Greco Hotel

4, Street 1821 Heraklion Crete Island

CA $97

CA $114 total

Oct 4 - Oct 5

includes taxes & fees

7.4/10 Good! (815 reviews)

Idi Hotel

Zaros Faistos Crete

CA $106

CA $121 total

Oct 12 - Oct 13

includes taxes & fees

9.2/10 Wonderful! (86 reviews)

Kronos Hotel

2, Sof. Venizelou Str. and M. Agarathou Heraklion Crete Island

CA $110

CA $128 total

Oct 31 - Nov 1

includes taxes & fees

8.8/10 Excellent! (651 reviews)

Frequently asked questions

What is the best area to stay in Ayios Thomas?

The best area to stay in Ayios Thomas is within the village itself, particularly around the central square and the main roads leading off it.This traditional Cretan village offers a genuine experience, with its narrow, winding streets, historic churches, and local tavernas. Key landmarks include the Church of Ayios Thomas and the ancient Roman aqueduct, which are easily accessible on foot. The village is compact and can be explored comfortably, offering a sense of local life.Couples looking for a peaceful retreat will find Ayios Thomas ideal. The quiet pace of life, combined with opportunities for scenic walks through the olive groves and vineyards surrounding the village, makes it superb for relaxation. Evenings can be spent enjoying authentic Cretan cuisine at the local tavernas, often with live music.For travellers interested in local culture and history, staying in Ayios Thomas provides direct access to its historic sites and the opportunity to interact with the local community.

When is the best time to go to Ayios Thomas?

The best time to go to Ayios Thomas is during late spring (May to early June) or early autumn (September to October) for pleasant weather and fewer crowds.During these shoulder seasons, the weather is warm and sunny, with average temperatures ranging from 20°C to 26°C, making it ideal for exploring the natural beauty of the area and enjoying the beaches without the intense heat of mid-summer. The sea is also warm enough for swimming, and the quieter atmosphere allows for a more relaxed experience.Couples looking for a romantic getaway will appreciate the serene environment and the opportunity to enjoy leisurely walks, explore local villages, and dine alfresco without the bustling crowds. This period also offers excellent conditions for hiking and visiting archaeological sites, as the temperatures are comfortable for outdoor activities.For families with young children, these months are particularly suitable as the milder temperatures are more agreeable for little ones, and the beaches are less crowded, offering a more relaxed setting for play.

Can I cancel my hotel reservation on Expedia?

You can cancel your hotel reservation on Expedia, though it depends on the cancellation policy of your booking. Most bookings are refundable if canceled within 24-48 hours of the scheduled arrival. Be sure to check your booking confirmation for the exact cancellation policy. If free cancellation is available, you can cancel directly through your Expedia account by logging in, going to "My Trips", and selecting your reservation. To find flexible deals, filter your search by "Fully refundable property" for hotels in Ayios Thomas.

How much is the nightly rate at a Ayios Thomas hotel?

Prices for hotels in Ayios Thomas often vary, but you can find a great deal from CA $79 on Expedia. All sorts of factors affect price, such as the time of year or the days of the week you choose for your stay. Find the best deals by being flexible with your dates, and sort search results by "Price: low to high" for the cheapest rate.

Find hotels in Ayios Thomas from CA $79

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Ayios Thomas

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Ayios Thomas hotels

1. Idi Hotel

2. Manili Boutique Suites & Villas, an SLH Hotel

3. Traditional Cretan Houses

4. Chapter 02 Gallery Suites

5. Sofia Hotel

6. Arolithos Traditional Cretan Village

7. Stay 365 Heraklion Apart Hotel

8. Marvel Deluxe Rooms

9. Karteros Hotel

10. Asterion Hotel

11. Atrion Hotel

12. Nuovo Crete By Sea - Adults Only

13. Yianna Caravel Suites "by Checkin" adults only

14. Artree Suites

15. Kronos Hotel

16. Galaxy Hotel Iraklio

17. Marin Hotel

18. Anesea City

19. Nesean Plaza Hotel

20. Petousis Hotel & Suites

Top Ayios Thomas Hotel Reviews

Aquila Atlantis Hotel

Peninsula Resort & Spa - All Inclusive

Lato Boutique Hotel

Mirabello Hotel

GDM Megaron Historical Monument Hotel

Artion City Boutique Hotel

Ethereal White Resort Hotel & Spa - Adults Only

Sofia Hotel

Galaxy Hotel Iraklio

More cheap stays in Ayios Thomas

Mirabello Hotel

Pela Mare Hotel

Thalia Bloom Villa Apartments

El Greco Hotel

Idi Hotel

Kronos Hotel

Frequently asked questions

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