Find Cheap Hotels in Isahaya from CA $36

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Check prices for these dates

Tonight
Nov 11 - Nov 12
Tomorrow
Nov 12 - Nov 13
This weekend
Nov 13 - Nov 15
Next weekend
Nov 20 - Nov 22

Our top choices for Isahaya cheap hotels

A hotel room with a bed, a desk with a computer, a television, and a microwave.

1. HOTEL R9 The Yard Omura

HOTEL R9 The Yard Omura
2.0 star property
Omura
9.0 out of 10, Wonderful, (41 reviews)
"👍 Parking lot in front of hotel room"
Hong Kong SAR China
Tsz Kin
The price is CA $60
CA $67 total
Nov 29 - Nov 30
HOTEL R9 The Yard Omura
A hallway with a wooden floor, a brick wall, a fire extinguisher, and a potted plant.

2. villageBFH - Hostel

villageBFH - Hostel
1.0 star property
Omura
8.4 out of 10, Very good, (172 reviews)
"very clean and very friendly staff. would love to come back, great price"
Japan
Lewis
The price is CA $37
CA $41 total
Nov 20 - Nov 21
villageBFH - Hostel
A traditional Japanese room with tatami flooring, a low table, blue chairs, and a view of the sea.

3. Nagasaki House Burabura - Hostel

Nagasaki House Burabura - Hostel
2.0 star property
Nagasaki
8.4 out of 10, Very good, (79 reviews)
"Fantastic view"
Sweden
mikael
The price is CA $65
CA $79 total
Nov 15 - Nov 16
Nagasaki House Burabura - Hostel
A modern living room with a flat-screen TV, a brown leather sofa, and a wooden accent wall.

4. Grand Base Urakami

Grand Base Urakami
3.0 star property
Nagasaki
8.8 out of 10, Excellent, (77 reviews)
"The room is huge we felt very comfortable there very clean beautiful bathroom Beautiful shower all of that the only thing I would suggest is that they have a few little condiments like maybe salt pepper that sort of thing that's the only suggestion I would give. Really a beautiful beautiful large room almost like a small apartment we were very comfortable there beautiful. Very strategically located next to also the subway"
United States
JOHN
The price is CA $81
CA $89 total
Nov 16 - Nov 17
Grand Base Urakami
A modern bedroom with a large bed, a desk, and a chair.

5. Hostel Casa Noda

Hostel Casa Noda
2.0 star property
Nagasaki
8.2 out of 10, Very good, (363 reviews)
"Great room and convenient area. Close to the station."
United States
Collin
The price is CA $52
CA $63 total
Dec 7 - Dec 8
Hostel Casa Noda
A hallway with a wooden table and chairs, a door with a sign, and a white shelving unit.

6. Route - Hostel

Route - Hostel
2.0 star property
Nagasaki
9.0 out of 10, Wonderful, (83 reviews)
"One of my favorite hostels Ive stayed in Japan! You stay right above their cafe, which is very close to Nagasaki Station."
United States
STEPHEN
The price is CA $56
CA $62 total
Nov 17 - Nov 18
Route - Hostel
A modern, minimalist room with a dining area, a bed, and a staircase.

7. Casa Blanca Guesthouse - Hostel

Casa Blanca Guesthouse - Hostel
2.0 star property
Nagasaki Chinatown
8.2 out of 10, Very good, (249 reviews)
"Staff was amazing, rooms were comfy, breakfast option is good, 7/11 right across the street, overall loved it and would stay again"
United States
Fernanda
The price is CA $54
CA $65 total
Nov 25 - Nov 26
Casa Blanca Guesthouse - Hostel
A hotel room with two single beds, a desk, a chair, a mirror, and a ceiling light fixture.

8. Hotel 21

Hotel 21
2.0 star property
Nagasaki
5.0 out of 10, (18 reviews)
"Great boutique hotel which is very convenient. Walking distance to train station. Staff was very polite and friendly. Room was spacious enough and very clean. Strongly recommended! "
United States
Jun
The price is CA $57
CA $63 total
Nov 12 - Nov 13
Hotel 21
A traditional Japanese room with tatami flooring, a futon bed, a wooden chair, and a sliding shoji screen.

9. Chatamago

Chatamago
2.0 star property
Nagasaki
7.6 out of 10, Good, (9 reviews)
"清潔な客室ですが、シャワー浴室の、脱衣所がありません マイナスポイントです。"
Japan
MASAHIRO
The price is CA $53
CA $59 total
Nov 15 - Nov 16
Chatamago
A modern bedroom with a large bed, a round table, and a view of the city through a large window.

10. HOTEL URO - hostel

HOTEL URO - hostel
2.0 star property
Nagasaki
9.4 out of 10, Exceptional, (3 reviews)
"まだ新しい施設なのでとても綺麗でした。立地も路面電車や商店街から近く便利です。"
Japan
Mari
The price is CA $71
CA $78 total
Nov 16 - Nov 17
HOTEL URO - hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Isahaya Hotel Reviews

A modern living room with a flat-screen TV, a brown leather sofa, and a wooden accent wall.
Grand Base Urakami

Grand Base Urakami

Grand Base Urakami
Nagasaki

10/10 Excellent

Clean rooms
Canada
Susan
Reviewed May 22, 2026
Grand Base Urakami

Frequently Asked Questions

What is Isahaya like for travelers on a budget?

Explore cheap places to stay in Isahaya on Expedia.com and book a vacation that sticks within your budget. You can look through a variety of hotels and other types of accommodation with Member Prices to score great deals. Guided by our site's handy page filters, you can limit results by price per night, or by favorite amenities like free breakfast and free parking. Or, try refining your search with the location filters to see affordable options around local attractions, such as Isahaya Park or Konagai Culture Hall. While you browse, use the heart button to save your favorites so that it's easy to find them and make your final decision. Need a flight or a car for your trip? Take a look at the Bundle and Save travel packages and discover more amazing deals by booking transportation at the same time.

When is the best time for a budget trip to Isahaya?

Weather is probably a major factor when you plan your trip to Isahaya, and keep in mind that cheaper options are usually available when the weather isn't as good. The hottest months are usually August and July with an average temp of 77°F, while the coldest months are January and February with an average of 48°F. The rainiest months in Isahaya are June, July, August, and May, with each month seeing an average of 15 inches of rainfall.

What is there to see and do in Isahaya?

You won't have to spend big to get to know Isahaya. You can budget for the local attractions that interest you most, and then make time for activities that cost little or nothing at all. Check out the local culture at Nagasaki Museum of History and Culture and Twenty-Six Martyrs Museum and Monument, or visit other spots like Nagasaki Prefectural Art Museum.

How can I get to Isahaya and get around on a budget?

Scoping out the transportation options in Isahaya is a smart way to keep your trip affordable. The closest airport is Nagasaki Airport (NGS), 9.8 mi (15.8 km) away. However, if that doesn't suit your budget, the next closest is 25 mi (40.3 km) away: Ariake Saga Airport (HSG). Isahaya might not have very many public transit options so renting a car could be an economical alternative to see the area.