Find hotels near Mission Bay, San Diego from CA $109

    Plan, book, stay with confidence
    bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    today icon
    Change your mind
    Book hotels with free cancellation

Filter by

Popular filters
Popular filters
Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Area
Area
Popular locations
1
Popular locations
Meal plans available
Meal plans available
Amenities
Amenities
Accessibility
Accessibility
Traveller experience
Traveller experience

Top Hotels Close to Mission Bay

Paradise Point Resort & Spa
4.0 star property
8.4 out of 10, Very good, 1,815 reviews
"Really relaxing place."
The price is CA $400
CA $512 total
includes taxes & fees
Jun 9 - Jun 10
Paradise Point Resort & Spa
Wyndham Garden San Diego Near SeaWorld
3.0 star property
7.2 out of 10, Good, 2,716 reviews
"Ns"
The price is CA $189
CA $213 total
includes taxes & fees
Jun 4 - Jun 5
Wyndham Garden San Diego Near SeaWorld
The Dana on Mission Bay
3.5 star property
8.8 out of 10, Excellent, 2,512 reviews
"It’s a little dated but it’s located near many things and staff was very friendly. Great place for the price."
The price is CA $244
CA $275 total
includes taxes & fees
Jun 12 - Jun 13
The Dana on Mission Bay
Save an average of 15% on thousands of hotels when you're signed in
California Suites Hotel
2.0 star property
7.0 out of 10, Good, 1,353 reviews
"No sun. Couldn't go lay in the sun"
The price is CA $124
CA $140 total
includes taxes & fees
Jun 4 - Jun 5
California Suites Hotel
San Diego Mission Bay Resort
4.0 star property
8.2 out of 10, Very good, 1,014 reviews
"From the moment we got there the mission bay resort staff was awesome. We weren’t able to check in early but we had everything set up and they told us we could relax at the pool while we waited for our room to be ready. 10/10 would recommend you stay here. "
The price is CA $375
CA $482 total
includes taxes & fees
Jun 9 - Jun 10
San Diego Mission Bay Resort
Mission Bay Inn San Diego
2.5 star property
7.4 out of 10, Good, 1,014 reviews
"It’s very convenient to the airport and other places in San Diego. "
The price is CA $142
CA $160 total
includes taxes & fees
Jun 10 - Jun 11
Mission Bay Inn San Diego
Catamaran Resort and Spa
4.0 star property
7.8 out of 10, Good, 1,099 reviews
"We loved our stay. Great location, loved the restaurant, bar and coffee shop. "
The price is CA $380
CA $497 total
includes taxes & fees
Jun 11 - Jun 12
Catamaran Resort and Spa
Ocean Villa Inn
2.5 star property
8.2 out of 10, Very good, 1,006 reviews
"Awesome "
The price is CA $183
CA $202 total
includes taxes & fees
Jun 5 - Jun 6
Ocean Villa Inn
La Jolla Shores Hotel
3.0 star property
8.8 out of 10, Excellent, 1,262 reviews
"Friendly staff, nice location, and great views. "
The price is CA $465
CA $573 total
includes taxes & fees
Jun 18 - Jun 19
La Jolla Shores Hotel
Handlery Hotel
3.5 star property
7.8 out of 10, Good, 1,587 reviews
"Clean rooms"
The price is CA $183
CA $211 total
includes taxes & fees
Jun 11 - Jun 12
Handlery Hotel
Old Town Inn
2.5 star property
9.2 out of 10, Wonderful, 1,373 reviews
"It was clean and walking distance to Old Town. Did not have any drawers to put clothes away."
The price is CA $272
CA $306 total
includes taxes & fees
Jun 4 - Jun 5
Old Town Inn
Hampton Inn San Diego/Mission Valley
2.5 star property
8.6 out of 10, Excellent, 1,007 reviews
"Good "
The price is CA $219
CA $247 total
includes taxes & fees
Jun 16 - Jun 17
Hampton Inn San Diego/Mission Valley
Four Points by Sheraton San Diego
3.5 star property
7.8 out of 10, Good, 1,007 reviews
"Clean room and kind staff"
The price is CA $232
CA $261 total
includes taxes & fees
Jun 20 - Jun 21
Four Points by Sheraton San Diego
Residence Inn by Marriott San Diego Sorrento Mesa/Sorrento Valley
3.0 star property
8.8 out of 10, Excellent, 566 reviews
"Overall it was a very nice experience. Staff was amazing, sweet, and helpful. Breakfast was amazing! Love the room. It was a very peaceful and relaxing stay. Would definitely go back."
The price is CA $219
CA $247 total
includes taxes & fees
Jun 9 - Jun 10
Residence Inn by Marriott San Diego Sorrento Mesa/Sorrento Valley
Holiday Inn Express & Suites La Jolla – Windansea Beach, an IHG Hotel
2.5 star property
8.8 out of 10, Excellent, 1,005 reviews
"Very good "
The price is CA $263
CA $296 total
includes taxes & fees
Jun 9 - Jun 10
Holiday Inn Express & Suites La Jolla – Windansea Beach, an IHG Hotel
E-Z 8 Motel Old Town
2.5 star property
5.8 out of 10, 2,044 reviews
"The stay was good but the floors were a little dirty. "
The price is CA $109
CA $123 total
includes taxes & fees
Jun 4 - Jun 5
E-Z 8 Motel Old Town
Riverleaf Inn Mission Valley
2.5 star property
5.8 out of 10, 1,210 reviews
"I liked the putting range and hot tub. The free coffee was nice. Friendly and nice staff. Reasonable rates. Lots of birds and noturnal animals: cats, skunks, racoons a bunch of homeless folks walking by the Inn."
The price is CA $133
CA $150 total
includes taxes & fees
Jun 4 - Jun 5
Riverleaf Inn Mission Valley
Pantai Inn
3.5 star property
9.4 out of 10, Exceptional, 892 reviews
"The view. The amenities. The room was perfect what we needed. Thank you"
The price is CA $372
CA $448 total
includes taxes & fees
Jun 30 - Jul 1
Pantai Inn
Hotel La Jolla, Curio Collection by Hilton
4.0 star property
9.0 out of 10, Wonderful, 13 reviews
"This place was great. Loved everything about it. "
The price is CA $315
CA $394 total
includes taxes & fees
Jun 10 - Jun 11
Hotel La Jolla, Curio Collection by Hilton
Grande Colonial Hotel
4.0 star property
9.4 out of 10, Exceptional, 1,004 reviews
"Wonderful staff!!!"
The price is CA $367
CA $482 total
includes taxes & fees
Jun 4 - Jun 5
Grande Colonial Hotel
Don't see what you're looking for?
See all available properties in Mission Bay
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Hotels near Other San Diego Attractions

Frequently asked questions

What's the area like around Mission Bay?

Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 64 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Mission Bay?

Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.7 mi (1.2 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 1 mi (1.6 km) away.

How many hotels can I expect to find close to Mission Bay?

Expedia has 64 hotels and other accommodations within a mile from Mission Bay.

If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?

Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel’s cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.

Where can I learn more about changing or cancelling my trip in the area near Mission Bay?

For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.

What can I see and do near Mission Bay?

Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.

Recent Reviews in Mission Bay
Expedia verified reviews