Title: Book the Best CHEAP Hotels in Southeast Minnesota, MN from CA $99 - Southeast Minnesota Cheap Hotels | Expedia.ca [Southeast Minnesota Travel Guide](https://expedia.ca/Southeast-Minnesota.dx6233996)[Hotels in Southeast Minnesota](https://expedia.ca/Southeast-Minnesota-Hotels.d6233996.Travel-Guide-Hotels)[Vacation Rentals in Southeast Minnesota](https://expedia.ca/Southeast-Minnesota-Vacation-Rentals.d6233996.Travel-Guide-VacationRentals)[Flights to Southeast Minnesota](https://expedia.ca/Cheap-Flights-To-Southeast-Minnesota.d6233996.Travel-Guide-Flights)[Southeast Minnesota Car Rentals](https://expedia.ca/Car-Rentals-In-Southeast-Minnesota.d6233996.Car-Rental-Guide)[Southeast Minnesota Vacation Packages](https://expedia.ca/Southeast-Minnesota.d6233996.Destination-Travel-Guides) ![The Mississippi River near Hannibal, Missouri, USA](https://images.trvl-media.com/place/6209928/2afb9a4b-494b-462a-af23-159cb6a96bb2.jpg?impolicy=fcrop&w=1200&h=500&q=medium) # Find Cheap Hotels in Southeast Minnesota, MN from CA $99 - ![](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__calendar_shield.svg) ### Change your mind Book hotels with free cancellation - ![](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__deals.svg) ### Treat yourself Sign in to save 10% or more on thousands of hotels [Sign in](https://www.expedia.ca/login) - ![](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__bed.svg) ### Be picky Search almost a million properties worldwide ## Check availability on Southeast Minnesota Cheap Hotels Tonight [Dec 21 - Dec 22](https://www.expedia.ca/Hotel-Search?regionId=6233996&startDate=2025-12-21&endDate=2025-12-22&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true&travelerType=budget_property) Tomorrow [Dec 22 - Dec 23](https://www.expedia.ca/Hotel-Search?regionId=6233996&startDate=2025-12-22&endDate=2025-12-23&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true&travelerType=budget_property) Next weekend [Dec 26 - Dec 28](https://www.expedia.ca/Hotel-Search?regionId=6233996&startDate=2025-12-26&endDate=2025-12-28&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true&travelerType=budget_property) In two weeks [Jan 2 - Jan 4](https://www.expedia.ca/Hotel-Search?regionId=6233996&startDate=2026-01-02&endDate=2026-01-04&adults=2&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true&travelerType=budget_property) ## Our top choices for Southeast Minnesota cheap hotels ![Front of property](https://images.trvl-media.com/lodging/8000000/7780000/7772100/7772018/569eb353.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby sitting area](https://images.trvl-media.com/lodging/8000000/7780000/7772100/7772018/dd818bd0.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Children's pool](https://images.trvl-media.com/lodging/8000000/7780000/7772100/7772018/adc84b77.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/8000000/7780000/7772100/7772018/1a6136b4.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S [](https://www.expedia.ca/Rochester-Hotels-La-Quinta-Inn-Suites-By-Wyndham-Rochester-Mayo-Clinic-S.h7772018.Hotel-Information) Rochester 7.2/10 Good (1025) "Staff was courteous and breakfast was well stocked." ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Doug CA $97 CA $112 total includes taxes & fees Dec 24 - Dec 25 [](https://www.expedia.ca/Rochester-Hotels-La-Quinta-Inn-Suites-By-Wyndham-Rochester-Mayo-Clinic-S.h7772018.Hotel-Information) ![Property amenity](https://images.trvl-media.com/lodging/1000000/540000/538500/538443/7134cbc0.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/1000000/540000/538500/538443/b75bfa05.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/1000000/540000/538500/538443/ad31d44c.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/1000000/540000/538500/538443/fbd34e02.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Country Inn & Suites by Radisson, Albert Lea - Austin [](https://www.expedia.ca/Owatonna-Hotels-Country-Inn-Suites-By-Radisson.h538443.Hotel-Information) Albert Lea 9.0/10 Wonderful (1001) "Nice place to stay" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Mary CA $116 CA $128 total includes taxes & fees Dec 28 - Dec 29 [](https://www.expedia.ca/Owatonna-Hotels-Country-Inn-Suites-By-Radisson.h538443.Hotel-Information) ![Desk, blackout drapes, iron/ironing board, free cribs/infant beds](https://images.trvl-media.com/lodging/1000000/860000/853500/853433/d78e621e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/1000000/860000/853500/853433/85d1ed51.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/1000000/860000/853500/853433/881774df.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Property amenity](https://images.trvl-media.com/lodging/1000000/860000/853500/853433/f5c13843.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### AmericInn by Wyndham Rochester [](https://www.expedia.ca/Rochester-Hotels-AmericInn-By-Wyndham-Rochester-Airport.h853433.Hotel-Information) Rochester 8.8/10 Excellent (1001) "Enjoyed our stay, rated breakfast as a erage as we did not try it." ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) jeanne CA $104 CA $120 total includes taxes & fees Dec 26 - Dec 27 [](https://www.expedia.ca/Rochester-Hotels-AmericInn-By-Wyndham-Rochester-Airport.h853433.Hotel-Information) ![Indoor pool, a heated pool, open 6:00 AM to 10:00 PM, sun loungers](https://images.trvl-media.com/lodging/1000000/10000/7300/7291/c72d412e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/1000000/10000/7300/7291/1ea8aa7d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Room, 1 Queen Bed, Non Smoking, Pool View](https://images.trvl-media.com/lodging/1000000/10000/7300/7291/51fba05a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Free daily continental breakfast](https://images.trvl-media.com/lodging/1000000/10000/7300/7291/11614fa3.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Ramada by Wyndham Albert Lea [](https://www.expedia.ca/Owatonna-Hotels-Ramada-By-Wyndham-Albert-Lea.h7291.Hotel-Information) Albert Lea 7.4/10 Good (1001) "Vary nice stay, everything it should be" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Sheila CA $89 CA $99 total includes taxes & fees Dec 30 - Dec 31 [](https://www.expedia.ca/Owatonna-Hotels-Ramada-By-Wyndham-Albert-Lea.h7291.Hotel-Information) ![Free daily full breakfast](https://images.trvl-media.com/lodging/1000000/130000/120400/120366/a9a2e28e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Standard Room, 1 King Bed, Non Smoking, Refrigerator & Microwave (with Sofabed)](https://images.trvl-media.com/lodging/1000000/130000/120400/120366/372fe31d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Standard Room, Multiple Beds, Non Smoking, Refrigerator & Microwave](https://images.trvl-media.com/lodging/1000000/130000/120400/120366/ad82600e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/1000000/130000/120400/120366/b3313d0c.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Best Western Plus Albert Lea I-90/I-35 Hotel [](https://www.expedia.ca/Owatonna-Hotels-Best-Western-Plus-Albert-Lea-I-90I-35-Hotel.h120366.Hotel-Information) Albert Lea 9.0/10 Wonderful (1001) "Friendly front desk. Good place. " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Barry CA $117 CA $130 total includes taxes & fees Dec 28 - Dec 29 [](https://www.expedia.ca/Owatonna-Hotels-Best-Western-Plus-Albert-Lea-I-90I-35-Hotel.h120366.Hotel-Information) ![Double Room, 2 Double Beds](https://images.trvl-media.com/lodging/1000000/30000/25900/25829/0c966560.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Double Room, Accessible | Bathroom](https://images.trvl-media.com/lodging/1000000/30000/25900/25829/8f0d22b7.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Free daily continental breakfast](https://images.trvl-media.com/lodging/1000000/30000/25900/25829/20f614ed.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/1000000/30000/25900/25829/af407d71.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Days Inn by Wyndham Austin [](https://www.expedia.ca/Rochester-Hotels-Days-Inn-By-Wyndham-Austin.h25829.Hotel-Information) Austin 8.0/10 Very good (725) "Nice place - clean & convenient." ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Carmen CA $106 CA $117 total includes taxes & fees Dec 28 - Dec 29 [](https://www.expedia.ca/Rochester-Hotels-Days-Inn-By-Wyndham-Austin.h25829.Hotel-Information) ![Reception](https://images.trvl-media.com/lodging/4000000/3400000/3395700/3395689/05c87b51.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Front of property](https://images.trvl-media.com/lodging/4000000/3400000/3395700/3395689/81bc0968.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Room, 2 Queen Beds, Non Smoking](https://images.trvl-media.com/lodging/4000000/3400000/3395700/3395689/a2215e68.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Handrails in stairways](https://images.trvl-media.com/lodging/4000000/3400000/3395700/3395689/be9b9262.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### America's Stay Inn Stewartville [](https://www.expedia.ca/Rochester-Hotels-Americas-Stay-Inn-Stewartville.h3395689.Hotel-Information) Stewartville 8.0/10 Very good (419) "Room was nicer and furnished better than most high end places I’ve stayed at. It’s a small hotel on a busy road, but comfortable bed and clean." ![Canada](https://a.travel-assets.com/egds/marks/flags/ca.svg) Robert [](https://www.expedia.ca/Rochester-Hotels-Americas-Stay-Inn-Stewartville.h3395689.Hotel-Information) ![Reception](https://images.trvl-media.com/lodging/1000000/20000/16600/16522/c73455d9.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Indoor pool](https://images.trvl-media.com/lodging/1000000/20000/16600/16522/d590e034.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/1000000/20000/16600/16522/be8f1f7b.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![In-room safe, laptop workspace, blackout drapes, iron/ironing board](https://images.trvl-media.com/lodging/1000000/20000/16600/16522/2cfd2f94.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Hampton Inn Rochester-South [](https://www.expedia.ca/Rochester-Hotels-Hampton-Inn-Rochester.h16522.Hotel-Information) Rochester 9.0/10 Wonderful (1010) "We had a wonderful stay!" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Sarah CA $114 CA $131 total includes taxes & fees Jan 11 - Jan 12, 2026 [](https://www.expedia.ca/Rochester-Hotels-Hampton-Inn-Rochester.h16522.Hotel-Information) ![Desk, laptop workspace, soundproofing, iron/ironing board](https://images.trvl-media.com/lodging/1000000/910000/900200/900114/3d4463e0.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/1000000/910000/900200/900114/83ea29de.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/1000000/910000/900200/900114/d7b13a1e.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Indoor pool](https://images.trvl-media.com/lodging/1000000/910000/900200/900114/4afabd7a.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Boarders Inn & Suites by Cobblestone Hotels - Faribault [](https://www.expedia.ca/Owatonna-Hotels-Boarders-Inn-Suites-By-Cobblestone-Hotels-Faribault.h900114.Hotel-Information) Faribault 8.2/10 Very good (1001) "Great stay and friendly staff" ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Andrew s [](https://www.expedia.ca/Owatonna-Hotels-Boarders-Inn-Suites-By-Cobblestone-Hotels-Faribault.h900114.Hotel-Information) ![Lobby](https://images.trvl-media.com/lodging/18000000/17290000/17289900/17289857/07179e13.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Suite, Multiple Beds, Accessible, Non Smoking (Efficiency, Upgrade)](https://images.trvl-media.com/lodging/18000000/17290000/17289900/17289857/c9ae5c91.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/18000000/17290000/17289900/17289857/77b4b77d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Lobby](https://images.trvl-media.com/lodging/18000000/17290000/17289900/17289857/e261cbb4.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Sleep Inn & Suites West-Near Medical Center [](https://www.expedia.ca/Rochester-Hotels-Sleep-Inn-Suites-West-Near-Medical-Center.h17289857.Hotel-Information) Rochester 9.0/10 Wonderful (584) "Nice place to stay " ![United States](https://a.travel-assets.com/egds/marks/flags/us.svg) Melissa CA $98 CA $113 total includes taxes & fees Jan 11 - Jan 12, 2026 [](https://www.expedia.ca/Rochester-Hotels-Sleep-Inn-Suites-West-Near-Medical-Center.h17289857.Hotel-Information) Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply. [View all properties](https://expedia.ca/Hotel-Search?startDate=2026-01-04&endDate=2026-01-05®ionId=6233996&adults=2&sort=BUDGET&openPlayBack=true) ## Top Southeast Minnesota Hotel Reviews ![Best Western Rochester Hotel Mayo Clinic Area/St. Mary's](https://images.trvl-media.com/lodging/1000000/10000/3700/3682/w3836h2559x4y0-f5ee734c_y.jpg) ### Best Western Rochester Hotel Mayo Clinic Area/St. Mary's 10/10 Excellent "Rooms have had the large items renovated(carpets, bathroom) but the small details are not t" [](https://expedia.ca/Rochester-Hotels-Best-Western-Rochester-Hotel-Mayo-Clinic-AreaSt-Marys.h3682.Hotel-Information) ![Brentwood Inn & Suites](https://images.trvl-media.com/lodging/11000000/10010000/10007700/10007613/d36e6ac3_y.jpg) ### Brentwood Inn & Suites 10/10 Excellent "This was my second stay at Brentwood. Both times I found it to be very clean and the staff was friendly and helpful. It’s a nice, quiet place to stay and economical. I will stay there again. " [](https://expedia.ca/Rochester-Hotels-Brentwood-Inn-Suites.h10007613.Hotel-Information) ![Kahler Grand Hotel](https://images.trvl-media.com/lodging/1000000/30000/25600/25516/a12994da_y.jpg) ### Kahler Grand Hotel 10/10 Excellent "Great place to stay downtown. " [](https://expedia.ca/Rochester-Hotels-Kahler-Grand-Hotel.h25516.Hotel-Information) ![Hotel Indigo Rochester – Mayo Clinic Area by IHG](https://images.trvl-media.com/lodging/1000000/10000/5400/5327/48e45010_y.jpg) ### Hotel Indigo Rochester – Mayo Clinic Area by IHG 10/10 Excellent "The room was nice, staff were friendly and the skyway to the Civic Center was great & very convenient! Would stay here again!" [](https://expedia.ca/Rochester-Hotels-Hotel-Indigo-Rochester-Downtown.h5327.Hotel-Information) ![SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys](https://images.trvl-media.com/lodging/1000000/110000/102000/101902/39da8a7c_y.jpg) ### SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys 10/10 Excellent "The pool was very warm and the hot tub was very good 😊" [](https://expedia.ca/Rochester-Hotels-SpringHill-Suites-By-Marriott-Rochester-Mayo-ClinicSt-Marys.h101902.Hotel-Information) ![AmericInn by Wyndham Rochester Near Mayo Clinic](https://images.trvl-media.com/lodging/1000000/10000/8100/8008/71b6fb30_y.jpg) ### AmericInn by Wyndham Rochester Near Mayo Clinic 10/10 Excellent "It was an amazing stay. Shuttle to the hospital saved parking headaches. " [](https://expedia.ca/Rochester-Hotels-Ramada-By-Wyndham-Rochester-Mayo-Clinic-Area.h8008.Hotel-Information) ![Kahler Inn and Suites - Mayo Clinic Area](https://images.trvl-media.com/lodging/1000000/180000/171600/171566/e56e7dae_y.jpg) ### Kahler Inn and Suites - Mayo Clinic Area 10/10 Excellent "Clean, comfortable, and having the enclosed walkway to go from the hotel to Mayo was fantastic, especially with it being winter. " [](https://expedia.ca/Rochester-Hotels-Kahler-Inn-And-Suites-Mayo-Clinic-Area.h171566.Hotel-Information) ![Med City Inn & Suites - Mayo Clinic Area](https://images.trvl-media.com/lodging/1000000/10000/4200/4106/821fc05d_y.jpg) ### Med City Inn & Suites - Mayo Clinic Area 10/10 Excellent "Scrambled eggs, sausage, hard boiled eggs, fresh fruit, muffins, bagels nd more" [](https://expedia.ca/Rochester-Hotels-GuestHouse-Rochester.h4106.Hotel-Information) ## Explore a world of travel with Expedia - Lodging - Flights - Packages - Cars - Vacation Rental - More ways to book - [4 Star Hotels in Northwest ](https://www.expedia.ca/4Star-Northwest-Rochester-Hotels.s40-n900102874825277440-0.Travel-Guide-Filter-Hotels) - [Hotels near Apache Mall ](https://www.expedia.ca/Apache-Mall-Hotels.0-l6188936-0.Travel-Guide-Filter-Hotels) - [Farmstay in Byron ](https://www.expedia.ca/Byron-Agritourism.d553248623858895563-aaAgritourism.Travel-Guide-Accommodation) - [Aparthotels in Byron ](https://www.expedia.ca/Byron-Apart-Hotels.d553248623858895563-aaApartHotels.Travel-Guide-Accommodation) - 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