Title: Best San Juan Island Apart hotels | Expedia.ca [San Juan Island Travel Guide](https://expedia.ca/San-Juan-Island.dx6054490)[Hotels in San Juan Island](https://expedia.ca/San-Juan-Island-Hotels.d6054490.Travel-Guide-Hotels)[Vacation Rentals in San Juan Island](https://expedia.ca/San-Juan-Island-Vacation-Rentals.d6054490.Travel-Guide-VacationRentals)[Flights to San Juan Island](https://expedia.ca/Cheap-Flights-To-San-Juan-Island.d6054490.Travel-Guide-Flights)[Things to do in San Juan Island](https://expedia.ca/Things-To-Do-In-San-Juan-Island.d6054490.Travel-Guide-Activities)[San Juan Island Car Rentals](https://expedia.ca/Car-Rentals-In-San-Juan-Island.d6054490.Car-Rental-Guide)[San Juan Island Vacation Packages](https://expedia.ca/San-Juan-Island.d6054490.Destination-Travel-Guides) ![San Juan Island which includes a bridge, general coastal views and a coastal town](https://a.travel-assets.com/findyours-php/viewfinder/images/res70/47000/47908-San-Juan-Islands.jpg?impolicy=fcrop&w=1200&h=500&q=medium) # Search Apart Hotels in San Juan Island ![calendar shield illustration](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__calendar_shield.svg) ### Change your mind Book hotels with free cancellation ![deals illustration](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__deals.svg) ### Treat yourself Sign in to save 10% or more on thousands of hotels [Sign in](https://www.expedia.ca/login) ![bed illustration](https://a.travel-assets.com/travel-assets-manager/pictogram-bex/light__bed.svg) ### Be picky Search almost a million properties worldwide ## Check prices for these dates In two weeks [Oct 17 - Oct 19](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-10-17&endDate=2025-10-19&adults=2&lodging=APART_HOTEL&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) In two months [Nov 28 - Nov 30](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-11-28&endDate=2025-11-30&adults=2&lodging=APART_HOTEL&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) In three months [Dec 26 - Dec 28](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2025-12-26&endDate=2025-12-28&adults=2&lodging=APART_HOTEL&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) In four months [Jan 23 - Jan 25](https://www.expedia.ca/Hotel-Search?regionId=6054490&startDate=2026-01-23&endDate=2026-01-25&adults=2&lodging=APART_HOTEL&rfrr=TG.LP.CheckPrices.Hotel&openPlayBack=true) ## Browse Select San Juan Island Aparthotels ![Fridge, microwave, oven, stovetop](https://images.trvl-media.com/lodging/118000000/117780000/117770400/117770374/485c10c9.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Smart TV](https://images.trvl-media.com/lodging/118000000/117780000/117770400/117770374/0e2a70bc.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![3 bedrooms, free WiFi, bed sheets](https://images.trvl-media.com/lodging/118000000/117780000/117770400/117770374/d688db46.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fridge, microwave, oven, stovetop](https://images.trvl-media.com/lodging/118000000/117780000/117770400/117770374/bc99cc26.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Brand New Madrona Suites #3 Modern 3 bedroom in the heart of Orcas Island Eastsound 10/10 Exceptional (2) "Great location and property. The hosts are very responsive with questions and very helpful. Had a great time!" [](https://www.expedia.ca/Eastsound-Hotels-Brand-New-Suites-In-Eastsound-On-Orcas-Island.h117770374.Hotel-Information) ![1 bedroom, iron/ironing board, free WiFi, bed sheets](https://images.trvl-media.com/lodging/30000000/29990000/29982000/29981982/13353bdd.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Coffee and/or coffee maker](https://images.trvl-media.com/lodging/30000000/29990000/29982000/29981982/5ddd754d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Hair dryer, towels, soap, toilet paper](https://images.trvl-media.com/lodging/30000000/29990000/29982000/29981982/10dca9f0.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Interior](https://images.trvl-media.com/lodging/30000000/29990000/29982000/29981982/f7444596.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### #1TripAdvisor-Waterviews-Fireplace-King Bed-Soaking Tub ⛴🌅🔥🛁 Lopez Island 9.0/10 Wonderful (2) "The location is right in the heart of Lopez Village, so it's easy to walk to everything in town, including the famers' market. Check in and check out was a breeze, and the property is very clean and charming. The outdoor space is very welcoming, and you can tell a lot of love goes into keeping the garden and house tidy." [](https://www.expedia.ca/Lopez-Island-Hotels-1tripadvisor-Waterviews-Fireplace-King-Bed-Soaking-Tub.h29981982.Hotel-Information) ![Property grounds](https://images.trvl-media.com/lodging/74000000/73240000/73239200/73239101/8bdd3088.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Dining](https://images.trvl-media.com/lodging/74000000/73240000/73239200/73239101/be66c636.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![8 bedrooms, iron/ironing board, free WiFi, bed sheets](https://images.trvl-media.com/lodging/74000000/73240000/73239200/73239101/da4ad0be.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fridge, microwave, oven, stovetop](https://images.trvl-media.com/lodging/74000000/73240000/73239200/73239101/1827d1f7.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### Breathtaking modern boutique hotel with hot tubs & ocean views Friday Harbor [](https://www.expedia.ca/Friday-Harbor-Hotels-Breathtaking-Modern-Boutique-Hotel-With-Hot-Tubs-Ocean-Views.h73239101.Hotel-Information) ![Dining](https://images.trvl-media.com/lodging/101000000/100960000/100953600/100953510/23711252.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/101000000/100960000/100953600/100953510/fabdeb3c.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![TV, fireplace, DVD player](https://images.trvl-media.com/lodging/101000000/100960000/100953600/100953510/9658d2c2.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![1 bedroom, iron/ironing board, travel crib, free WiFi](https://images.trvl-media.com/lodging/101000000/100960000/100953600/100953510/62f33b6d.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### ✨NEW✨ Bright in-town Penthouse with roof deck 😎 Friday Harbor [](https://www.expedia.ca/Friday-Harbor-Hotels-Penthouse-6.h100953510.Hotel-Information) ![Exterior](https://images.trvl-media.com/lodging/35000000/34450000/34444600/34444568/d68a5fbd.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Fireplace](https://images.trvl-media.com/lodging/35000000/34450000/34444600/34444568/19199c83.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![1 bedroom, iron/ironing board, free WiFi, bed sheets](https://images.trvl-media.com/lodging/35000000/34450000/34444600/34444568/be3278cc.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Beach nearby](https://images.trvl-media.com/lodging/35000000/34450000/34444600/34444568/cab7f030.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### ♥️KING Sleigh Bed DEEP SoakingTub/REAL Fireplace/Breakfast/WIFI/HeartofVilliage♥ Lopez Island 10/10 Exceptional (5) "Wonderful!" [](https://www.expedia.ca/Lopez-Island-Hotels-KING-Sleigh-Bed-DEEP-SoakingTubREAL-FireplaceBreakfastWIFIHeartofVilliage.h34444568.Hotel-Information) ![Outdoor dining](https://images.trvl-media.com/lodging/101000000/100960000/100953300/100953273/e6c956e5.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Exterior](https://images.trvl-media.com/lodging/101000000/100960000/100953300/100953273/314d3c05.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![View from property](https://images.trvl-media.com/lodging/101000000/100960000/100953300/100953273/f4161af1.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ![Interior](https://images.trvl-media.com/lodging/101000000/100960000/100953300/100953273/9a048697.jpg?impolicy=fcrop&w=357&h=201&p=1&q=medium) ### ✨NEW✨ Two-level Penthouse in-town with awesome harbor view deck 😎 Friday Harbor [](https://www.expedia.ca/Friday-Harbor-Hotels-Penthouse-3.h100953273.Hotel-Information) Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply. [View all properties](https://expedia.ca/Hotel-Search?startDate=2025-10-13&endDate=2025-10-14®ionId=6054490&adults=2&lodging=APART_HOTEL&sort=RECOMMENDED&openPlayBack=true) ![](https://a.travel-assets.com/pricing-claim/sparkle_dark.svg) Save an average of 15% on thousands of hotels when you're signed in [Sign in](https://expedia.ca/user/signin?ckoflag=0&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Island-Apart-Hotels.d6054490-aaApartHotels.Travel-Guide-Accommodation)[Sign up, it's free](https://expedia.ca/signup?enable_registration=true&+=&uurl=e3id%3Dredr%26rurl%3D%2FSan-Juan-Island-Apart-Hotels.d6054490-aaApartHotels.Travel-Guide-Accommodation) ## Top San Juan Island Hotel Reviews ![Friday Harbor Suites](//images.trvl-media.com/lodging/2000000/1190000/1189800/1189744/4322486e_y.jpg) ### Friday Harbor Suites 10/10 Excellent "Clean, great location, mini kitchen a plus!" [](https://expedia.ca/Friday-Harbor-Hotels-Friday-Harbor-Suites.h1189744.Hotel-Information) ![Anacortes Inn](//images.trvl-media.com/lodging/9000000/8470000/8460900/8460818/b20aae51_y.jpg) ### Anacortes Inn 10/10 Excellent "Stayed one night for a family members bday in town. It suited our needs for a night. Close to everything in town. Clean,updated, overall real good experience. Would recommend. " [](https://expedia.ca/Mount-Vernon-Hotels-Anacortes-Inn.h8460818.Hotel-Information) ![Snug Harbor Resort](//images.trvl-media.com/lodging/35000000/34850000/34844100/34844071/5b4be07d_y.jpg) ### Snug Harbor Resort 10/10 Excellent "Very nice and private." [](https://expedia.ca/Friday-Harbor-Hotels-Snug-Harbor-Resort.h34844071.Hotel-Information) ![The Marina Inn](//images.trvl-media.com/lodging/14000000/13140000/13137200/13137122/e3c0d7e6_y.jpg) ### The Marina Inn 10/10 Excellent " ." [](https://expedia.ca/Mount-Vernon-Hotels-The-Marina-Inn.h13137122.Hotel-Information) ![Coachman Inn & Suites](//images.trvl-media.com/lodging/1000000/10000/1600/1576/90febc8a_y.jpg) ### Coachman Inn & Suites 10/10 Excellent "Nice place. Clean and well maintained. Good value and good breakfast bar. " [](https://expedia.ca/Oak-Harbor-Hotels-Coachman-Inn-Suites.h1576.Hotel-Information) ![Anaco Bay Inn](//images.trvl-media.com/lodging/6000000/5770000/5765400/5765350/26f01d23_y.jpg) ### Anaco Bay Inn 10/10 Excellent "Reasonable rates, convenient." [](https://expedia.ca/Mount-Vernon-Hotels-Anaco-Bay-Inn.h5765350.Hotel-Information) ![Trumpeter Inn](//images.trvl-media.com/lodging/35000000/34910000/34909100/34909004/6ed42192_y.jpg) ### Trumpeter Inn 10/10 Excellent "It was especially nice to find that the Trumpeter Inn is on a large property that includes a pasture inhabited by friendly goats and alpacas that eat from your hand (food packets provided by our hosts!), outside sitting areas in lovely flower gardens, and ample room inside to meet, sit, and chat with other guests." [](https://expedia.ca/Friday-Harbor-Hotels-Trumpeter-Inn.h34909004.Hotel-Information) ![The Orca Inn](//images.trvl-media.com/lodging/6000000/5790000/5784300/5784280/d74d1a58_y.jpg) ### The Orca Inn 10/10 Excellent "I did not expect much for the price we paid but this little gem met all our needs. The front desk woman CJ was super helpful when we added a night to our stay. Will def stay here again. But if you plan to stay in your room for other than a shower and sleep, this may not the place for you." [](https://expedia.ca/Friday-Harbor-Hotels-The-Orca-Inn.h5784280.Hotel-Information) ![Earthbox Inn & Spa](//images.trvl-media.com/lodging/2000000/1060000/1050900/1050864/57b4454b_y.jpg) ### Earthbox Inn & Spa 10/10 Excellent "The hotel was in a very convenient location. Perfect for your fur babies to take on a walk. The room was clean and well equipped to host our 1 year old and 2 dogs. We had a lovely time. The hotel manager had excellent suggestions to explore on the island. Will definitely will stay with them next time." [](https://expedia.ca/Friday-Harbor-Hotels-Earthbox-Inn-Spa.h1050864.Hotel-Information) ## Find out more about San Juan Island ## San Juan Island Aparthotels information | Number of reviews | 1 | | --- | --- | | Accommodation | 6 Aparthotels | | Lowest Price | | | Highest Price | | ## Explore a world of travel with Expedia - Lodging - Flights - Packages - Cars - Vacation Rental - Other - More ways to book - [B&B in Deer Harbor](https://www.expedia.ca/Deer-Harbor-Bed-And-Breakfast.d177456-aaBedAndBreakfast.Travel-Guide-Accommodation) - [Resorts in Deer Harbor](https://www.expedia.ca/Deer-Harbor-Resort-Hotels.d177456-aaResortHotels.Travel-Guide-Accommodation) - [Motels in False Bay](https://www.expedia.ca/False-Bay-Motels.d3000382380-aaMotels.Travel-Guide-Accommodation) - [Aparthotels in Friday Harbor](https://www.expedia.ca/Friday-Harbor-Apart-Hotels.d1248-aaApartHotels.Travel-Guide-Accommodation) - [Apartments in Friday Harbor](https://www.expedia.ca/Friday-Harbor-Apartments.d1248-aaApartments.Travel-Guide-Accommodation) - 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[Flights from Bradford (BFD) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/bfd/frd/bradford-to-friday-harbor) - [Flights from Boston (BOS) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/bos/frd/boston-to-friday-harbor) - [Flights from Brainerd (BRD) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/brd/frd/brainerd-to-friday-harbor) - [Flights from Port Angeles (CLM) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/clm/frd/port-angeles-to-friday-harbor) - [Flights from Detroit (DTW) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/dtw/frd/detroit-to-friday-harbor) - [Flights from Devils Lake (DVL) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/dvl/frd/devils-lake-to-friday-harbor) - [Flights from El Paso (ELP) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/elp/frd/el-paso-to-friday-harbor) - [Flights from Nema (EMN) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/emn/frd/nema-to-friday-harbor) - [Flights from Green Bay (GRB) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/grb/frd/green-bay-to-friday-harbor) - [Flights from Helena (HLN) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/hln/frd/helena-to-friday-harbor) - [Flights from Washington (IAD) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/iad/frd/washington-to-friday-harbor) - [Flights from Thorne Bay (KTB) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/ktb/frd/thorne-bay-to-friday-harbor) - [Flights from Las Vegas (LAS) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/las/frd/las-vegas-to-friday-harbor) - [Flights from Manhattan (MHK) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/mhk/frd/manhattan-to-friday-harbor) - [Flights from Tokyo (NRT) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/nrt/frd/tokyo-to-friday-harbor) - [Flights from Oakland (OAK) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/oak/frd/oakland-to-friday-harbor) - [Flights from Anacortes (OTS) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/ots/frd/anacortes-to-friday-harbor) - [Flights from Seattle Paine Field Intl. Airport (PAE) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/pae/frd/seattle-paine-field-intl-airport-to-friday-harbor) - [Flights from Portland (PDX) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/pdx/frd/portland-to-friday-harbor) - [Flights from Port Moller (PML) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/pml/frd/port-moller-to-friday-harbor) - [Flights from Pullman (PUW) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/puw/frd/pullman-to-friday-harbor) - [Flights from Russian Mission (RSH) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/rsh/frd/russian-mission-to-friday-harbor) - [Flights from Rosario (RSJ) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/rsj/frd/rosario-to-friday-harbor) - [Flights from Seattle (SEA) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/sea/frd/seattle-to-friday-harbor) - [Flights from San José (SJO) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/sjo/frd/san-jose-to-friday-harbor) - [Flights from Salt Lake City (SLC) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/slc/frd/salt-lake-city-to-friday-harbor) - [Flights from Tacoma (TIW) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/tiw/frd/tacoma-to-friday-harbor) - [Flights from Taitung (TTT) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/ttt/frd/taitung-to-friday-harbor) - [Flights from Port Townsend (TWD) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/twd/frd/port-townsend-to-friday-harbor) - [Flights from Dax (XDA) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/xda/frd/dax-to-friday-harbor) - [Flights from Edmonton (YEG) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/yeg/frd/edmonton-to-friday-harbor) - [Flights from Hamilton (YHM) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/yhm/frd/hamilton-to-friday-harbor) - [Flights from Kelowna (YLW) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/ylw/frd/kelowna-to-friday-harbor) - [Flights from Vancouver (YVR) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/yvr/frd/vancouver-to-friday-harbor) - [Flights from Calgary (YYC) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/yyc/frd/calgary-to-friday-harbor) - [Flights from Victoria (YYJ) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/yyj/frd/victoria-to-friday-harbor) - [Flights from Toronto (YYZ) to Friday Harbor (FRD)](https://www.expedia.ca/lp/flights/yyz/frd/toronto-to-friday-harbor) - [Friday Harbor Vacations](https://www.expedia.ca/Friday-Harbor.d1248.Destination-Travel-Guides) - [Visit Friday Harbor](https://www.expedia.ca/Friday-Harbor.dx1248) - [Car rental Friday Harbor](https://www.expedia.ca/Car-Rentals-In-Friday-Harbor.d1248.Car-Rental-Guide) - [Rental cars Friday Harbor airport](https://www.expedia.ca/Car-Rentals-In-Friday-Harbor.d6024413.Car-Rental-Guide) - [Friday Harbor Vacation Rentals](https://www.expedia.ca/Friday-Harbor-Vacation-Rentals.d1248.Travel-Guide-VacationRentals) - [Things to do in Friday Harbor](https://www.expedia.ca/Things-To-Do-In-Friday-Harbor.d1248.Travel-Guide-Activities) - [Book Aparthotels in San Juan Island on Expedia.com](https://www.expedia.com/San-Juan-Island-Apart-Hotels.d6054490-aaApartHotels.Travel-Guide-Accommodation)